Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30406
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 306 1e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 162 3e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 153 2e-38
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 110 1e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 82 6e-17
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 79 4e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 69 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 58 6e-10
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 40 3e-04
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.7
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc... 25 5.1
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 6.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 8.9
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.9
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 306 bits (751), Expect = 1e-84
Identities = 143/163 (87%), Positives = 153/163 (93%)
Frame = +2
Query: 26 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 205
RGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVITIGNERF
Sbjct: 196 RGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERF 255
Query: 206 RCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQK 385
R PEALFQPS LG+E+ GIHE YNSIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQK
Sbjct: 256 RAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQK 315
Query: 386 EITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 514
EI ALAPS++K+KI+APPERKYSVWIGGSILASLSTFQQMWIS
Sbjct: 316 EIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWIS 358
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 162 bits (393), Expect = 3e-41
Identities = 73/162 (45%), Positives = 108/162 (66%)
Frame = +2
Query: 29 GYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFR 208
G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F
Sbjct: 202 GHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFS 261
Query: 209 CPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKE 388
PE LF P +G E+ G+H ++ SI+ D+D+R LY+N V+SGG+T+ G +R E
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISE 321
Query: 389 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 514
+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 322 LRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 153 bits (370), Expect = 2e-38
Identities = 76/175 (43%), Positives = 115/175 (65%), Gaps = 12/175 (6%)
Frame = +2
Query: 26 RGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERF 205
+GY+F TA+ E VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI +G+ER+
Sbjct: 196 KGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERY 255
Query: 206 RCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQK 385
CPE LFQP +G E G+ E ++++I DVDIRK LY V+SGG++MY G+ R++K
Sbjct: 256 ECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEK 315
Query: 386 EITAL--------APSTI---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWIS 514
EI L P+ + K+KI P R+++V+IGG++LA ++ MW+S
Sbjct: 316 EIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVS 370
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 110 bits (264), Expect = 1e-25
Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 11/171 (6%)
Frame = +2
Query: 35 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCP 214
S+ +R ++ + KE + V + A AS+ K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV---LDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRIS 299
Query: 215 EALFQPSFLGMESC---------GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGI 367
E LF PSF S G+HE VY SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 368 ADRMQKEITALAP-STIKIKII-APPERKYSVWIGGSILASLSTFQQMWIS 514
++R+Q E+ LA S I + +VW GGSILASL FQ +W+S
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVS 410
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 81.8 bits (193), Expect = 6e-17
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 436
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 437 ---PERKYSVWIGGSILASLSTFQQMWIS 514
ER Y+ W+GGSIL+SL TF Q+WIS
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWIS 413
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 79.0 bits (186), Expect = 4e-16
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Frame = +2
Query: 53 EREIVRDIKEKLCYVALDFEQEMATAAAS--TSLEKSYELPD------------------ 172
E IV +IKE +CYV+ +F+++M + LE Y LPD
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIE 270
Query: 173 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTT 352
QV+ + NERF PE LF PS + + GI E V S+ +I+ L N V GG
Sbjct: 271 QQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNC 330
Query: 353 MYPGIADRMQKEITALAPSTIKIKIIAPPE 442
+PG R+ E+ +LAP+ ++K+ P +
Sbjct: 331 KFPGFHKRLSSELRSLAPANWEVKVFEPSD 360
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 69.3 bits (162), Expect = 3e-13
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Frame = +2
Query: 74 IKEKLCYVALDFEQEMATAAASTS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 241
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 242 GMESCG-IHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTI- 415
+ + E V N + +D+RK LY N V+SGG+T++ +R+Q+++ + I
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 416 -------------KIKIIAPPERKYSVWIGGSILASLSTF 496
+ +I+ ++ +VW GGS+LA F
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 58.4 bits (135), Expect = 6e-10
Identities = 25/92 (27%), Positives = 50/92 (54%)
Frame = +2
Query: 197 ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADR 376
E+ R PE +F PS +G++ GI E + + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 377 MQKEITALAPSTIKIKIIAPPERKYSVWIGGS 472
+++E+T++ P I + W G S
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 39.5 bits (88), Expect = 3e-04
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +2
Query: 311 KDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 481
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 482 SLSTFQQMWI 511
+ ++WI
Sbjct: 587 RIRIVSELWI 596
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 383 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 493
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC16A3.08c |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 262 PRDRVQLHHEVRRRHP*GPVRQHRHVRWYHHVPRYRRQDAEGD 390
PR+ V R+R P P + R V PR RRQ +G+
Sbjct: 41 PRELVAQSTTSRKRDPNQPTPRERTVNKKADQPRRRRQAPQGN 83
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 409 DHQDQDHRSPREEVLRMDRWIHPG 480
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 8.9
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +2
Query: 179 VITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSIMKCDVDIRKDLYANTVMSGGTTM 355
++T+ NE + E L S S E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 356 YPGIADRMQKEITALAPSTIKIKIIAPPERKYS 454
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 450 YFLSGGAMILILMVEGARAVISFCILSAIPGY 355
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 89 CYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCP 214
CYV+ +E + + SL SY +PD + I + R+ P
Sbjct: 39 CYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRDARYHSP 81
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +2
Query: 74 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 181
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,843
Number of Sequences: 5004
Number of extensions: 34153
Number of successful extensions: 124
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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