Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30405
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 151 6e-38
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac... 27 1.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 2.9
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 26 2.9
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 3.8
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 5.1
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 5.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.7
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 151 bits (366), Expect = 6e-38
Identities = 67/84 (79%), Positives = 76/84 (90%)
Frame = +2
Query: 101 AVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSY 280
AVIK DMSE+MQQ+A+ A QA+EKF IEKDIAAFIK+EFDKK++PTWHCIVGRNFGS+
Sbjct: 2 AVIKAVDMSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSF 61
Query: 281 VTHETRHFIYFYLGQVAILLFKSG 352
VTHE+RHFIYFYLG VA LLFKSG
Sbjct: 62 VTHESRHFIYFYLGTVAFLLFKSG 85
>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 446
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 451 PQPEPRMRICKGYPSDNTASAA-NKKIEVMLNGLTALKEQYSH 326
PQ EP + Y N A N+++EV+ + L+ LKEQ +H
Sbjct: 307 PQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +2
Query: 62 KQKQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNP 241
+QKQ + + RK K M+E+ + + + L K N+E +K+ N
Sbjct: 527 QQKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN- 585
Query: 242 TWHCIVGRN 268
+H IV N
Sbjct: 586 KYHPIVSSN 594
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 213 LMNAAMSFSMLNFSSA*VAQSTASCCISSLMSAFFMTALRSHILSWVCFC 64
L N SF + N + A+ C+SSL+ L L W+C C
Sbjct: 139 LKNPDGSFRVNNEGESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKC 188
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 173 RALELHSQQHLAASLRSCQHSL*LLCDHTSCL-GFVFAS 60
++L L + QH+ L SC ++L +L H CL F++ S
Sbjct: 39 KSLHLMTSQHIFKCLSSCNYALSIL--HNICLASFLYLS 75
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 412 PSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASL 290
P+DN A+ IE +L+G+T KE+ H+ ++ ASL
Sbjct: 160 PNDNLAAQYQFWIERLLHGITE-KEELQHIYKILTLTPASL 199
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 153 STASCCISSLMSAFFMTALRSHIL-SWVCFCFDK*TISHVKILITGDS 13
S +S +S++ + ++ S +L SW+CF I+ V I+++G S
Sbjct: 3547 SISSAKLSTICRSVLKASVNSALLTSWICFLNSIGAINCVGIVVSGRS 3594
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 5.1
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 65 QKQTQD--KMCDRKAVIKNADMSEEMQQDAVDCATQALEKF 181
+K+T + KM K ++K AD+S +Q+D + T+ LEK+
Sbjct: 521 EKKTDEPVKMRKVKKLVKVADLSVSVQEDRL--PTEVLEKY 559
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 175 LERLSCTVNSILLHLFAHVSILYDCF 98
LE L+ +N + +FA++ + DCF
Sbjct: 565 LEFLNSCINRCISRVFAYLDVCVDCF 590
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,584
Number of Sequences: 5004
Number of extensions: 39226
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -