Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30404
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 37 0.002
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 34 0.015
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.044
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 31 0.077
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 30 0.24
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.31
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.55
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 29 0.55
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 0.72
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 0.72
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.95
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 1.3
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 2.9
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 2.9
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 2.9
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 5.1
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 5.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 6.7
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 6.7
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch... 25 8.9
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 25 8.9
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 36.7 bits (81), Expect = 0.002
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = -2
Query: 434 LEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKE 255
LE+E + + LKSLE ++ + EE ++ LT +LK + + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 254 VDRLEDELVAEKEKYKDIGDDLD 186
+ L++E +++ + + LD
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLD 979
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 33.9 bits (74), Expect = 0.015
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = -3
Query: 364 NAKRSTKIRSKPSPPV*RRLKHVPSS-PSVPCRNCKRRSIGLKTNLSPKRRNTRTSETIW 188
NAK + R SP L +PSS PS +N + I + S + N R++E ++
Sbjct: 186 NAKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVY 245
Query: 187 IPPXXXXXSRNKLPLYKD---SKSECPGNT-ISPRF 92
PP + L L KD KS+C NT + P F
Sbjct: 246 -PPPSKDLLQKLLALEKDGQVEKSDCSKNTQLKPSF 280
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 32.3 bits (70), Expect = 0.044
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 428 EELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQKEVD 249
+ELR + NL+ + +++ + E + +L RLK ++ Q+ +
Sbjct: 713 KELRSINQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRKRTQERLI 772
Query: 248 RLEDELVAEKEKYKDIGDDLDT 183
D+L+AE+E+ + DL T
Sbjct: 773 SENDKLLAERERLMSLVSDLQT 794
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/79 (24%), Positives = 38/79 (48%)
Frame = -2
Query: 437 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 258
+L+E + N+L SL+ S EK+ EY ++IKTL + + Q ++
Sbjct: 823 KLKESNEKMSNDLHSLQKSLEKSGI---EYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEI 879
Query: 257 EVDRLEDELVAEKEKYKDI 201
++ L + EK+++ +
Sbjct: 880 KLQELNGVIELEKQRFSTL 898
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 31.5 bits (68), Expect = 0.077
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = -2
Query: 446 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQK 267
+I ELE L +N K L E + + +I +L+T +K ++QK
Sbjct: 854 EIAELELSLVNEEHNRKKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQK 913
Query: 266 LQKEVDRLEDE 234
L E DRLE E
Sbjct: 914 LNHEFDRLERE 924
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Frame = -2
Query: 446 KIVELEEE---LRVVGNNLKSLEVSEEKANQR----EEEYKNQIKTL---TTRLKXXXXX 297
++ ELEEE LR+ +N + E+ +++ EEE + K L T +++
Sbjct: 56 QLEELEEETKQLRLKADNEDIQKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVK 115
Query: 296 XXXXXRSVQKLQKEVDRLEDELVAEKEKYKDIGDDLD 186
R VQ L++E D +E +L +KY + +LD
Sbjct: 116 AEHFERRVQSLERERDDMEQKLEEMTDKYTKVKAELD 152
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.31
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = -2
Query: 437 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTR----LKXXXXXXXXXXRSVQ 270
+L+E + + L+ + K+++ ++Y+ + L T ++ S+
Sbjct: 536 QLQEYVEEITQELQDTKEVLSKSSKESDDYEEVVGKLRTEAEREIEKFEKTIRENEESIS 595
Query: 269 KLQKEVDRLEDELVAEKEKYKDIGDDLD 186
++EV++L DE+ E+Y D + D
Sbjct: 596 LFKEEVEKLTDEITQLSERYNDKCHEFD 623
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.55
Identities = 19/77 (24%), Positives = 39/77 (50%)
Frame = -2
Query: 437 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 258
E +L V+ N+KS + ++ +E+K +++ L +L ++ ++
Sbjct: 483 EQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQL-------VNSSTELESVKS 535
Query: 257 EVDRLEDELVAEKEKYK 207
E ++L++ELV E EK K
Sbjct: 536 ENEKLKNELVLEIEKRK 552
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.7 bits (61), Expect = 0.55
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 295 PSSPSVPCRNCKRRSIGLKTNLSPKR 218
P+SP+VP + S+ TN+SP+R
Sbjct: 138 PNSPTVPSKFSLNPSVATSTNISPRR 163
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.3 bits (60), Expect = 0.72
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -2
Query: 437 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTLTTRLKXXXXXXXXXXRSVQKLQK 258
E+E EL+ + K +E+S E R + I ++ R + R KL+
Sbjct: 422 EMENELKAKLSRKKEIEISLESQGDRMSQLLANITSINERKENLTDKRKSLWREEAKLKS 481
Query: 257 EVDRLEDEL 231
++ ++D+L
Sbjct: 482 SIENVKDDL 490
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 28.3 bits (60), Expect = 0.72
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 263 AVSAR--NARRTRHVLQPPSDGW 325
+V+AR N RR RHVL P +GW
Sbjct: 211 SVNARHDNLRRKRHVLVQPQEGW 233
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 0.95
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -2
Query: 446 KIVELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKTL 327
+I +L EE + + ++ LE E+AN E+Y+ Q + L
Sbjct: 147 QITDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEAL 186
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 275 VQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVEL 168
+QK +KE +LE++L + KY++ ++ + V+L
Sbjct: 157 IQKAKKEESKLEEDLRNARAKYEESLEEFEDRMVQL 192
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 278 SVQKLQKEVDRLEDELVAEKEKYKDIGDDLDTAFVELILKE 156
+++ KEV ++ + +K+K D DD++ + E +L E
Sbjct: 69 TIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGKYFEELLAE 109
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 2.9
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = -3
Query: 394 LWKSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSV---PCRNCKRRSIGLKTNLSP 224
L+KS+ + K+ + S SP L H + + P +N +RR+ L+T L P
Sbjct: 322 LFKSEEEKDPVGKQKLPLESSLSP-----LDHSSAEKEMQKAPAKNKRRRTGSLETGLYP 376
Query: 223 KRRNT----RTSETIW 188
K T R+ +W
Sbjct: 377 KESPTPSKKRSKRVLW 392
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 138 LYNGSLFLEDELYEGGIQIVSDVLVFLLFGDKFVFKP--IDLLLQFLHGTLGELGTCFSL 311
LYN S ++ ++ S + V + +G +FVF+ ID L + LH L +G C L
Sbjct: 499 LYNISRGIDTDIINNETPRRS-ISVDVNWGVRFVFQEDGIDFLKRLLHELLSRMGKCQVL 557
Query: 312 L 314
L
Sbjct: 558 L 558
>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.1
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = -3
Query: 388 KSQRRRPTNAKRSTKIRSKPSPPV*RRLKHVPSSPSVPCRNCKRRSIGLKTNLSPKRRNT 209
KS K+S ++ KP V ++ P PS+ K S+ K+ PKR T
Sbjct: 106 KSNGNARKETKQSERVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKS--KPKRAGT 163
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 19 HVCMDFHNLKVRNTKYKLESMF 84
+VC F + + RN+KYK +SMF
Sbjct: 344 NVCYGFDDAQTRNSKYK-DSMF 364
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 159 GISFRYTKTRSLSALATPSARDSIFKHRF*FIFCIPDF 46
G++F TRS+ P+ARD + HR +P F
Sbjct: 934 GVNFIDVATRSIIDQEVPAARDLMAVHRDYVCVKVPQF 971
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.7
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +2
Query: 191 DRLRCPCISPFRRQVRLQAYRPPFAVSARNARRTR-HVLQPPSD 319
D L P +P R Q P + RNA RTR H P S+
Sbjct: 148 DSLESPVSAPSRHQSTYSYKGGPLNYNLRNASRTRSHQTLPSSN 191
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 111 LPGHSDFESLYNGSLFLEDELYEGGIQIVSDVLVFLL 221
L H S+YN +++LE L ++++ L LL
Sbjct: 106 LLSHCANRSIYNSTVYLEYLLNSSVLEVIDSTLALLL 142
>SPBC577.05c |rec27|mug41|meiotic recombination protein
Rec27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 404 NLKSLEVSEEKANQREEEYKNQIK 333
NLK++E +K +Q E EYK I+
Sbjct: 35 NLKNIERRVKKYDQIESEYKTNIE 58
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.9
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Frame = -2
Query: 437 ELEEELRVVGNNLKSLEVSEEKANQREEEYKNQIKT-LTTRLKXXXXXXXXXXRSVQKL- 264
E++E L V L E + +R+E+Y+ +I+ LT + + + L
Sbjct: 179 EMQESLAV---RLADCEEQLARETERQEQYEVEIQRHLTNQHQLEIELESTKASHTENLG 235
Query: 263 ------QKEVDRLEDELVAEKEKYKDIGDDLD 186
QK +D + ++ ++ ++Y+D+ ++LD
Sbjct: 236 ELTRNWQKAMDDVTEKFASKSKEYEDLQNELD 267
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,410
Number of Sequences: 5004
Number of extensions: 35811
Number of successful extensions: 160
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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