Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30403
(505 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 36 0.019
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08) 30 0.94
SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59) 29 1.6
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 28 5.0
SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36) 28 5.0
SB_867| Best HMM Match : Leo1 (HMM E-Value=0) 28 5.0
SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08) 27 6.6
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 27 8.8
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 35.9 bits (79), Expect = 0.019
Identities = 26/89 (29%), Positives = 42/89 (47%)
Frame = +1
Query: 46 DRKXAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER 225
D K E +H S+F +Y+LP + V++ +T DG L + A +E + TE
Sbjct: 67 DGKHKSEGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEALKAE----PQETEV 122
Query: 226 VVPIVETGAPYKKDEPVEKTTVETLDVST 312
+ TG+ + +K TLDVS+
Sbjct: 123 SLVGASTGSAGDIAKIDDKRFTVTLDVSS 151
>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
Length = 857
Score = 30.3 bits (65), Expect = 0.94
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 279 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 458
KD+ RNLG+ D E+ S G++ G + E T + + Q P ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361
Query: 459 SD 464
S+
Sbjct: 362 SE 363
>SB_44720| Best HMM Match : Helicase_C (HMM E-Value=0.59)
Length = 625
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +1
Query: 106 YSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPY 258
YS+ S + SD YL+ TA +SE +D + R V I TG P+
Sbjct: 171 YSITRGHSVMSEHLNIISDRYLLFTAQVSEGLDFSDINGRAVVI--TGLPF 219
>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 240 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 380
R WR+V R C + S + D GA + + + C TGT E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388
>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 363 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 452
TRG ER++HA + RK +++ T+ SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 2.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 109 SLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKT 285
++PVN+ A G +VT ++ V + T V P+V A K EP +T
Sbjct: 1250 TMPVNTQAVVANMVTQPHGTTIVTPAVANMVTQPHGTTIVTPVVTQSAVATK-EPARRT 1307
>SB_22969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +1
Query: 70 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 249
D DV+A Q YS PV + + + G L T + +KT+N + I+E
Sbjct: 61 DFDVYAHQSETEYSGPVPDPNSRPSGTYSKIGTLNATKLWTSFGNKTQNVQTFSLILENS 120
Query: 250 APY 258
PY
Sbjct: 121 KPY 123
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 61 KEDDHDVFASQFFHTYSLPVNSSAA 135
+E+D DV+A Y +P N SAA
Sbjct: 250 EEEDDDVYAQDIMSNYDIPKNISAA 274
>SB_18879| Best HMM Match : Pkinase_Tyr (HMM E-Value=7e-36)
Length = 617
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 70 DHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 249
D DV+A Q YS PV + + G L T +KT+N + + I+E
Sbjct: 137 DFDVYAHQSETQYSGPVPDPNNSPSGTCSKIGTLNATELSPSLGNKTQNVQTLSLILENS 196
Query: 250 APY 258
PY
Sbjct: 197 KPY 199
>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
Length = 591
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 303 RFYDSGAEDISSSG-SDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKR 446
R Y S +D G D + GEER +A + S+ + +P+RKR
Sbjct: 517 RAYSSEEDDGEEEGLGDLESDNEGEERLMNAKEGKDSEEESIEEPSRKR 565
>SB_23414| Best HMM Match : Tetraspannin (HMM E-Value=3.8e-08)
Length = 357
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 496 ILISLNAYTKLSLKQKLRFRVGSRCLFLSLHRVRRAWSVLSSPRVP 359
IL +L K S+KQ LRF S +F++ + + ++ S RVP
Sbjct: 112 ILCTLGCSRKPSIKQ-LRFYRSSFVIFITFEIIVMVFGIIQSSRVP 156
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 27.1 bits (57), Expect = 8.8
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Frame = +3
Query: 243 DWRSVQEGRACRK-----DDSRNLGRFYDSGAEDISSSGSDCSTGTRGE 374
D R +GR R D SR++GR D ED+SS S +R E
Sbjct: 1054 DGRGRDKGRQMRTRLPSIDSSRSMGRSSDEDHEDLSSEPSSSIENSRKE 1102
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 333 SSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRK 443
S+SGSD S R E D R+ R+R+ P R+
Sbjct: 839 SASGSDSSPHRRSESPRDRRRRSPEHRRRREASPPRR 875
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,273
Number of Sequences: 59808
Number of extensions: 209244
Number of successful extensions: 856
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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