Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30403
(505 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical ... 32 0.21
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 1.9
L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock pro... 29 1.9
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical pr... 28 4.4
U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone... 28 4.4
AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear recep... 28 4.4
AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear recep... 28 4.4
AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear recep... 28 4.4
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 28 4.4
>AC024830-3|AAF59604.3| 180|Caenorhabditis elegans Hypothetical
protein Y55F3BR.6 protein.
Length = 180
Score = 32.3 bits (70), Expect = 0.21
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 61 KEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERV-VPI 237
KED + S F + LP + V ++LT+DG+L + A E K + + + +
Sbjct: 113 KEDTYGTIESTFKRRFPLPKAVAPESVQSQLTADGHLTIDAKAPE--PKQEGARPIQIKV 170
Query: 238 VETGAPYKK 264
+ T A +K
Sbjct: 171 INTSAEQQK 179
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
protein C16C10.3 protein.
Length = 1032
Score = 29.1 bits (62), Expect = 1.9
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 216 YRARCTYCRDWRSVQEGRACR---KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTD 386
YR + RD+R V R +D+SR YDS + SS+G+D S E +
Sbjct: 324 YRGGRSDSRDFRGVYGNRGGNDRYRDESRGRRDMYDSRRDSGSSNGADYSPSDAAE--LE 381
Query: 387 HALRTR 404
HA R
Sbjct: 382 HAFGER 387
>L15188-10|AAA27953.1| 110|Caenorhabditis elegans Heat shock
protein protein 12.2 protein.
Length = 110
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 49 RKXAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 183
R + D+H A + Y LP + + V + L + G L +TA
Sbjct: 62 RHETRSDNHGTVAREINRAYKLPDDVDVSTVKSHLATRGVLTITA 106
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 28.3 bits (60), Expect = 3.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 210 EKYRARCTYCRDWRSVQEGRACR 278
+++R+ CT +W S+ G ACR
Sbjct: 146 DRWRSVCTMVTNWTSIDTGTACR 168
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 148 ELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQ 318
E + GY PI ++ + +T+R P V P D P +K + LDV +Q
Sbjct: 1734 ENKTSGYDSSGNPI-RSITSSGDTQRAPPYVSNLLPSSNDSPDDKVIKQVLDVMFSQ 1789
>Z36237-1|CAA85271.2| 619|Caenorhabditis elegans Hypothetical
protein C48D5.1 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 183 ADQRKC**NEKYRARCTYCRDWRSVQEG 266
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>U13076-1|AAA96984.1| 463|Caenorhabditis elegans steroid hormone
receptor familymember CNR8 protein.
Length = 463
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 183 ADQRKC**NEKYRARCTYCRDWRSVQEG 266
A + C +++YR+RC YCR + ++ G
Sbjct: 149 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 176
>AY204167-1|AAO39171.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 183 ADQRKC**NEKYRARCTYCRDWRSVQEG 266
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AF273770-1|AAG15119.1| 469|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 469
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 183 ADQRKC**NEKYRARCTYCRDWRSVQEG 266
A + C +++YR+RC YCR + ++ G
Sbjct: 155 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 182
>AF083224-1|AAD03682.1| 619|Caenorhabditis elegans nuclear receptor
NHR-6 protein.
Length = 619
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 183 ADQRKC**NEKYRARCTYCRDWRSVQEG 266
A + C +++YR+RC YCR + ++ G
Sbjct: 305 AGNKTCPIDKRYRSRCQYCRYQKCLEVG 332
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 27.9 bits (59), Expect = 4.4
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 279
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 429 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSTTPVQ 488
Query: 280 KTTVETLDVSTTQ 318
TT+ + ++T+
Sbjct: 489 TTTITAPETTSTE 501
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 279
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 682 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 741
Query: 280 KTTVETLDVSTTQ 318
TT+ + ++T+
Sbjct: 742 TTTITAPETTSTE 754
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 279
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 820 TSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQTTTTTAPETTSTEPPSSSTTPVQ 879
Query: 280 KTTVETLDVSTTQ 318
TT+ + ++T+
Sbjct: 880 TTTITAPETTSTE 892
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +1
Query: 103 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP-IVETGAPYKKDEPVE 279
T + P +SS V T+ T P S + + T P T P PV+
Sbjct: 751 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 810
Query: 280 KTTVETLDVSTTQ 318
TT+ + ++T+
Sbjct: 811 TTTITAPETTSTE 823
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,834,370
Number of Sequences: 27780
Number of extensions: 150868
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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