Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30403
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.59 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 186 DQRKC**NEKYRARCTYCRDWRSVQEG--RACRKDDSRNLGRFYDSGAEDISSSGSD 350
           +++ C  +++ R RC YCR  + +  G  R   +++ +       S  E  SS  SD
Sbjct: 148 EEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSD 204


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.59
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 186 DQRKC**NEKYRARCTYCRDWRSVQEG--RACRKDDSRNLGRFYDSGAEDISSSGSD 350
           +++ C  +++ R RC YCR  + +  G  R   +++ +       S  E  SS  SD
Sbjct: 148 EEKSCIIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRTKERDQSEVESTSSLHSD 204


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 160 DGYLVVTAPISENVDKTKNT 219
           +G + +   I++N+D  KNT
Sbjct: 408 NGSMEINQNIAQNIDHAKNT 427


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 248 PVSTIGTTRSVFFVLSTFSLIGAV 177
           P  T+    S+ FV+S F   GA+
Sbjct: 51  PSITLIVLGSIIFVISFFGCCGAI 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,436
Number of Sequences: 438
Number of extensions: 1679
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)