Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30403
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53800.1 68418.m06685 expressed protein                             33   0.14 
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    32   0.25 
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   1.3  
At2g04900.1 68415.m00509 expressed protein                             29   1.8  
At1g64550.1 68414.m07317 ABC transporter family protein similar ...    28   3.1  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    28   4.1  
At3g07090.1 68416.m00843 expressed protein                             28   4.1  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   4.1  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   4.1  
At5g47400.1 68418.m05841 hypothetical protein                          27   9.5  
At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4)...    27   9.5  
At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4)...    27   9.5  

>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 276 RKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFC 455
           R++  R      DSG+E    SGS+     R   R D   R   SDRK  R   R+R + 
Sbjct: 47  RRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKDRGKRK--SDRKSSRSRRRRRDYS 104

Query: 456 LSDN 467
            S +
Sbjct: 105 SSSS 108


>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 94  FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 252
           F H     +N++A+D+ +     G     +P++ENVD  K+T      PIV +G+
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
 Frame = +1

Query: 73  HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 249
           H +F+     T S P V  S A ++ EL        T  + E+ D+  ++E V P+ +  
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302

Query: 250 APYKKDEP--VEKTTVETLDVSTTQE 321
            P  K EP  V+  TVET+  +   E
Sbjct: 303 NPSPKSEPEPVKTITVETIHSAERSE 328


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 227 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 114
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At1g64550.1 68414.m07317 ABC transporter family protein similar to
           ABC transporter protein GB:AAF31030 GI:6899653 from
           [Leishmania major]
          Length = 715

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +1

Query: 112 LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 279
           +P N     V  E+  D    +   ++ ++++TK  E  + I+    ET  P  KD    
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287

Query: 280 KTTVE 294
           K TVE
Sbjct: 288 KDTVE 292


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 279 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHAL 395
           KD+S N      S A D++   + C T   G E TD+AL
Sbjct: 555 KDESYNNSHLKSSEATDVNMEDACCQTENNGSE-TDNAL 592



 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 484 LNAYTKLSLKQKLRFRVGSRCLFLSLHR 401
           LN Y+ LS K+   F V +R L  SLHR
Sbjct: 733 LNLYSALSTKKSEAFPVPTRQLAASLHR 760


>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 160 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 276
           DG  +V AP  E  + +  TE+V P+++  A  +  KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 179 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 93
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 179 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 93
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At5g47400.1 68418.m05841 hypothetical protein 
          Length = 665

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 82  FASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP 234
           FA +F HT    +   A  V + LTS   L+V   + +N+DK  ++++  P
Sbjct: 553 FAHKFLHTDPEIITQMALKVMSTLTSSKELLV---LMKNIDKAFHSKQTGP 600


>At2g43010.2 68415.m05338 phytochrome-interacting factor 4 (PIF4) /
           basic helix-loop-helix protein 9 (bHLH9) / short under
           red-light 2 (SRL2) identical to SP|Q8W2F3
           Phytochrome-interacting factor 4 (Basic helix-loop-helix
           protein 9) (bHLH9) (Short under red-light 2)
           {Arabidopsis thaliana}; supporting cDNA
           gi|18026965|gb|AF251694.1|AF251694
          Length = 428

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 282 DDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCLS 461
           D S+N+    +  A   S   S CS G   +E       T  +DRKR+R      S  LS
Sbjct: 182 DRSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCIT--TDRKRKRINHTDESVSLS 239

Query: 462 D 464
           D
Sbjct: 240 D 240


>At2g43010.1 68415.m05337 phytochrome-interacting factor 4 (PIF4) /
           basic helix-loop-helix protein 9 (bHLH9) / short under
           red-light 2 (SRL2) identical to SP|Q8W2F3
           Phytochrome-interacting factor 4 (Basic helix-loop-helix
           protein 9) (bHLH9) (Short under red-light 2)
           {Arabidopsis thaliana}; supporting cDNA
           gi|18026965|gb|AF251694.1|AF251694
          Length = 430

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 282 DDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCLS 461
           D S+N+    +  A   S   S CS G   +E       T  +DRKR+R      S  LS
Sbjct: 182 DRSKNIEEKLNPNASSSSGGSSGCSFGKDIKEMASGRCIT--TDRKRKRINHTDESVSLS 239

Query: 462 D 464
           D
Sbjct: 240 D 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,336,742
Number of Sequences: 28952
Number of extensions: 140924
Number of successful extensions: 485
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)