BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV30401 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 206 7e-54 At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 200 4e-52 At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 200 4e-52 At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 200 4e-52 At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 200 4e-52 At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 198 2e-51 At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 7e-06 At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 3.2 At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 4.3 At3g61590.1 68416.m06898 F-box family protein contains weak hit ... 27 5.7 At3g01450.1 68416.m00069 expressed protein 27 5.7 At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 27 7.5 At5g47430.1 68418.m05844 expressed protein 27 9.9 At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 9.9 At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 9.9 At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 9.9 At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 27 9.9 At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 27 9.9 >At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ribosomal protein S2 - Arabidopsis thaliana, SWISSPROT:RS2_ARATH Length = 276 Score = 206 bits (503), Expect = 7e-54 Identities = 91/115 (79%), Positives = 108/115 (93%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID +GPSL DEV+KIMPVQKQ Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYW Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYW 155 >At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar to ribosomal protein S2 GI:430711 from [Drosophila melanogaster] Length = 284 Score = 200 bits (488), Expect = 4e-52 Identities = 91/115 (79%), Positives = 104/115 (90%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163 >At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar to ribosomal protein S2 GI:939717 from [Urechis caupo] Length = 284 Score = 200 bits (488), Expect = 4e-52 Identities = 91/115 (79%), Positives = 104/115 (90%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163 >At1g58684.1 68414.m06657 40S ribosomal protein S2, putative Length = 284 Score = 200 bits (488), Expect = 4e-52 Identities = 91/115 (79%), Positives = 104/115 (90%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163 >At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar to ribosomal protein S2 GI:939717 from (Urechis caupo) Length = 284 Score = 200 bits (488), Expect = 4e-52 Identities = 91/115 (79%), Positives = 104/115 (90%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163 >At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) Length = 285 Score = 198 bits (483), Expect = 2e-51 Identities = 89/115 (77%), Positives = 104/115 (90%) Frame = +1 Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351 ++++WVPVTKLGRLV G I ++E IYL SLP+KE++IID +GP+L DEV+KIMPVQKQ Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109 Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516 TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 164 >At2g33800.1 68415.m04147 ribosomal protein S5 family protein contains Pfam profiles PF03719: Ribosomal protein S5, C-terminal domain, PF00333: Ribosomal protein S5, N-terminal domain Length = 303 Score = 47.2 bits (107), Expect = 7e-06 Identities = 19/62 (30%), Positives = 40/62 (64%) Frame = +1 Query: 316 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 495 + V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++ Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208 Query: 496 PV 501 V Sbjct: 209 QV 210 >At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc transporter ZIP2 [Arabidopsis thaliana] gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563 Length = 353 Score = 28.3 bits (60), Expect = 3.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +1 Query: 382 AFVAIGDNNGHIGLGVKCSKE 444 AFVA G NN H+G V S+E Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169 >At3g18530.1 68416.m02357 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] Length = 297 Score = 27.9 bits (59), Expect = 4.3 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -2 Query: 467 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMIFRTSSFR 309 A A+ H +P + P L P N R+R A CF +G + R + R Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235 >At3g61590.1 68416.m06898 F-box family protein contains weak hit to Pfam PF00646: F-box domain; stamina pistilloidia (Stp) - Pisum sativum, EMBL:AF004843 Length = 411 Score = 27.5 bits (58), Expect = 5.7 Identities = 9/15 (60%), Positives = 13/15 (86%) Frame = +2 Query: 14 LSEPIVQQWRTLLQP 58 +S PI +QWRTL++P Sbjct: 150 VSNPITKQWRTLIEP 164 >At3g01450.1 68416.m00069 expressed protein Length = 326 Score = 27.5 bits (58), Expect = 5.7 Identities = 13/41 (31%), Positives = 17/41 (41%) Frame = -2 Query: 467 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 345 A A+ H +P + P L P N R+R A CF Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224 >At5g35970.1 68418.m04332 DNA-binding protein, putative similar to SWISS-PROT:Q60560 DNA-binding protein SMUBP-2 (Immunoglobulin MU binding protein 2, SMUBP-2) [Mesocricetus auratus] Length = 961 Score = 27.1 bits (57), Expect = 7.5 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 362 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 270 P R FC+G+ +S + PR+KS +S+ L Sbjct: 43 PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73 >At5g47430.1 68418.m05844 expressed protein Length = 879 Score = 26.6 bits (56), Expect = 9.9 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = -3 Query: 154 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38 +H R DR EDR + H R H HR PP Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755 >At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 565 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -3 Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38 RDHDR +DR G R R R ++R R R P Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164 >At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 542 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -3 Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38 RDHDR +DR G R R R ++R R R P Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164 >At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit, putative similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumbaginifolia] GI:3850823 Length = 573 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = -3 Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38 RDHDR +DR G R R R ++R R R P Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164 >At3g59390.2 68416.m06624 expressed protein protein CG15643 - Drosophila melanogaster, EMBL:AE003499 Length = 273 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 387 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 515 CC W+ +R GC + S+ C+S Y C C S+ LL Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107 >At3g59390.1 68416.m06623 expressed protein protein CG15643 - Drosophila melanogaster, EMBL:AE003499 Length = 273 Score = 26.6 bits (56), Expect = 9.9 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = +3 Query: 387 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 515 CC W+ +R GC + S+ C+S Y C C S+ LL Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,526,158 Number of Sequences: 28952 Number of extensions: 208813 Number of successful extensions: 575 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 556 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 572 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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