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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30401
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   206   7e-54
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   200   4e-52
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   200   4e-52
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           200   4e-52
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   200   4e-52
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             198   2e-51
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    47   7e-06
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    28   3.2  
At3g18530.1 68416.m02357 expressed protein similar to unknown pr...    28   4.3  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   5.7  
At3g01450.1 68416.m00069 expressed protein                             27   5.7  
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t...    27   7.5  
At5g47430.1 68418.m05844 expressed protein                             27   9.9  
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit...    27   9.9  
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit...    27   9.9  
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit...    27   9.9  
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro...    27   9.9  
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro...    27   9.9  

>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  206 bits (503), Expect = 7e-54
 Identities = 91/115 (79%), Positives = 108/115 (93%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE++IID  +GPSL DEV+KIMPVQKQ
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQ 100

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+P+RRGYW
Sbjct: 101 TRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYW 155


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  200 bits (488), Expect = 4e-52
 Identities = 91/115 (79%), Positives = 104/115 (90%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  200 bits (488), Expect = 4e-52
 Identities = 91/115 (79%), Positives = 104/115 (90%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  200 bits (488), Expect = 4e-52
 Identities = 91/115 (79%), Positives = 104/115 (90%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  200 bits (488), Expect = 4e-52
 Identities = 91/115 (79%), Positives = 104/115 (90%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++ +WVPVTKLGRLV + KI KLE IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQ 108

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 109 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 163


>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  198 bits (483), Expect = 2e-51
 Identities = 89/115 (77%), Positives = 104/115 (90%)
 Frame = +1

Query: 172 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQ 351
           ++++WVPVTKLGRLV  G I ++E IYL SLP+KE++IID  +GP+L DEV+KIMPVQKQ
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109

Query: 352 TRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYW 516
           TRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYW
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYW 164


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 19/62 (30%), Positives = 40/62 (64%)
 Frame = +1

Query: 316 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 495
           + V+++  V K  + G++ +F+A V +GD  G++G+G   +KEV  A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208

Query: 496 PV 501
            V
Sbjct: 209 QV 210


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 382 AFVAIGDNNGHIGLGVKCSKE 444
           AFVA G NN H+G  V  S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169


>At3g18530.1 68416.m02357 expressed protein similar to unknown
           protein GB:AAF24615 from [Arabidopsis thaliana]
          Length = 297

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -2

Query: 467 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCFCTGMIFRTSSFR 309
           A   A+     H +P  + P L P   N   R+R  A  CF +G + R  + R
Sbjct: 184 AAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACF-SGCVPRLEAAR 235


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 14  LSEPIVQQWRTLLQP 58
           +S PI +QWRTL++P
Sbjct: 150 VSNPITKQWRTLIEP 164


>At3g01450.1 68416.m00069 expressed protein
          Length = 326

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 467 APRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 345
           A   A+     H +P  + P L P   N   R+R  A  CF
Sbjct: 184 AAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCF 224


>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
           SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
           (Immunoglobulin MU binding protein 2, SMUBP-2)
           [Mesocricetus auratus]
          Length = 961

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 362 PARVCFCTGMIFRTSSFRDGPRKKSMISNSL 270
           P R  FC+G+   +S  +  PR+KS +S+ L
Sbjct: 43  PTRKVFCSGVNGGSSVTKKKPRRKSNVSDKL 73


>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -3

Query: 154 DHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38
           +H R  DR  EDR   + H      R   H HR    PP
Sbjct: 718 EHDRTRDRRDEDRSRDHRHHRGETERSQHH-HRKRSEPP 755


>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 565

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38
           RDHDR  +DR G    R  R R ++R   R   R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164


>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 542

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38
           RDHDR  +DR G    R  R R ++R   R   R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164


>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit [Nicotiana plumbaginifolia] GI:3850823
          Length = 573

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 145 RDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 38
           RDHDR  +DR G    R  R R ++R   R   R P
Sbjct: 130 RDHDRRRDDRGGRRSRR-SRSRSKDRSERRTRSRSP 164


>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
           Drosophila melanogaster, EMBL:AE003499
          Length = 273

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 387 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 515
           CC W+ +R    GC +   S+ C+S  Y  C   C   S+ LL
Sbjct: 69  CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107


>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
           Drosophila melanogaster, EMBL:AE003499
          Length = 273

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 387 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 515
           CC W+ +R    GC +   S+ C+S  Y  C   C   S+ LL
Sbjct: 69  CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,526,158
Number of Sequences: 28952
Number of extensions: 208813
Number of successful extensions: 575
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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