Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30397
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    31   0.14 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   1.3  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   2.9  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    26   2.9  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   5.1  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   5.1  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.7  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    25   8.9  

>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 236 EGELSQTGIFFDDQLDEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARL 409
           +  L +  + F ++L + E+  YF+     S+  H  G       RRQ+ G T   RL
Sbjct: 17  DSSLDEDSLSFLEELQDPEL--YFKNDTFSSKSSHSDGTVTGDTLRRQSSGATALERL 72


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 278 LDEREI*GYFRRSAIHSRRDHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVH 439
           LD+ E+  +      + ++ + Q  EQH       R  +  ++ +  S HPPVH
Sbjct: 233 LDDAELYRFRSSRQTYPQQPNSQPCEQHPAHANLRRSVSLGSKDYLKSSHPPVH 286


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 341 GQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQRPGQHVV 484
           G+ +E+ GC R    G+  R  +  P+   PV PAD+      G  VV
Sbjct: 44  GKRLERLGCVRNLRIGQKFRGVVITPNGKVPVSPADKEYFDNGGASVV 91


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 213 RNSYFRPWRASLARQESSSTINLTKEKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEK 392
           R+SYF+   + L   E    +    ++FE IL       + +  K  NN ++  GK  + 
Sbjct: 188 RSSYFKSKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQL 247

Query: 393 QD 398
            D
Sbjct: 248 ND 249


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 179 LHQFIPLDLALQKFILQTLEGELSQTGIFFDDQLDEREI*GYFRRSAIHSRRDHGQGVE 355
           L  F+P D    +F     E + S  G  FDD L  R++  YF    + +    G+G++
Sbjct: 220 LCSFVPKDWVRDEFFDTLKEKKKSCKGFSFDDLL-RRDLKQYFPDGIVVNYASVGKGLD 277


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 335 DHGQGVEQHGCRRRQARGETGRARLHFPSVHPPVHPADRIRGQR 466
           D  QG E+      Q+   TGR +L    +H P  P  RI   R
Sbjct: 80  DSLQGFERTWKAVEQSLRRTGRPKLDVVLIHSPKWPVRRIESWR 123


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 224 LQTLEGELSQTGIFFDDQLDERE 292
           ++TLE ELSQ G+   +Q+ + +
Sbjct: 442 VRTLENELSQAGVNLQEQIHQND 464


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 288 EKFEVILDVQQFTPDEITVKASNNTVVVEGKHEEKQDEH 404
           E+F+ + D+ +  PD   +KA   T     +    + EH
Sbjct: 90  EQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEH 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,854,755
Number of Sequences: 5004
Number of extensions: 33252
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)