Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30397
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   10.0 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   10.0 

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 232 GLKYEFLKSEVEGNELMEDN 173
           G+K   + S+VEGN + E+N
Sbjct: 214 GVKNNHVSSKVEGNGVHEEN 233


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 187 LMEDNRSSFFRPMPKCWSSSL 125
           L   N ++FFR M + W ++L
Sbjct: 338 LTRQNPAAFFRGMMQAWMTAL 358


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 459 VNDLVSTLSSDGVLTVTAP 515
           VN+ V   S + VLTVTAP
Sbjct: 289 VNNSVGGESVETVLTVTAP 307


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 114 RCAPSHPTSRETSL 73
           RC+PS+P+   T L
Sbjct: 332 RCSPSNPSITRTGL 345


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +1

Query: 412  FPVSSPAGTSCRPDTRSTTWSARCL 486
            F  S  +    RPDT S  W+ + +
Sbjct: 1135 FSTSFDSKVMTRPDTDSENWTPKMM 1159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,691
Number of Sequences: 438
Number of extensions: 2361
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)