Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30396
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 191 6e-50
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 118 5e-28
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 109 2e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 108 4e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 74 1e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 73 3e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 4e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 49 4e-07
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 32 0.059
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 1.3
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 8.9
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 191 bits (465), Expect = 6e-50
Identities = 85/93 (91%), Positives = 90/93 (96%)
Frame = +1
Query: 238 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 417
KYPIEHGI+ NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETF
Sbjct: 68 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETF 127
Query: 418 NSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 516
N+PA YVAIQAVLSLYASGRTTGIVLDSGDGV+
Sbjct: 128 NAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVT 160
Score = 134 bits (324), Expect = 7e-33
Identities = 59/69 (85%), Positives = 66/69 (95%)
Frame = +3
Query: 39 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 218
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 219 RGILTXEVP 245
RGILT + P
Sbjct: 62 RGILTLKYP 70
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 118 bits (284), Expect = 5e-28
Identities = 50/93 (53%), Positives = 73/93 (78%)
Frame = +1
Query: 238 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 417
KYP+E+GII ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 68 KYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERY 127
Query: 418 NSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 516
+YVAIQAVLSLYA G ++G+V+DSGDGV+
Sbjct: 128 GFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVT 160
Score = 58.8 bits (136), Expect = 4e-10
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +3
Query: 51 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 224
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 225 ILTXEVP 245
+L + P
Sbjct: 64 LLQVKYP 70
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 109 bits (263), Expect = 2e-25
Identities = 50/92 (54%), Positives = 67/92 (72%), Gaps = 1/92 (1%)
Frame = +1
Query: 244 PIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 420
PIE GII NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 421 SPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 516
PA+ ++Q VL+LYAS RTTGIVL+ GDG++
Sbjct: 134 VPALSFSLQPVLALYASARTTGIVLECGDGLT 165
Score = 77.8 bits (183), Expect = 9e-16
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = +3
Query: 45 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 224
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 225 ILTXEVP 245
+L + P
Sbjct: 68 LLKIQRP 74
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 108 bits (260), Expect = 4e-25
Identities = 64/151 (42%), Positives = 87/151 (57%), Gaps = 13/151 (8%)
Frame = +1
Query: 103 ATTRPAPSSRPSWVALATRA*WSVWARKTPT---WVTRPRAREVSS--LXKYPIEHGIIT 267
A++ PA SS+PS++A S R T ++ ++ S+ YPI HG I
Sbjct: 42 ASSGPAVSSKPSYMASKGSGHLSS-KRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIE 100
Query: 268 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQ 447
NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+Q
Sbjct: 101 NWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQ 160
Query: 448 AVLSLYASGRT--------TGIVLDSGDGVS 516
AVL+L AS + TG V+DSGDGV+
Sbjct: 161 AVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 57 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 206
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 74.1 bits (174), Expect = 1e-14
Identities = 34/89 (38%), Positives = 50/89 (56%)
Frame = +1
Query: 238 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 417
K I +G + NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 66 KNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESL 125
Query: 418 NSPAMYVAIQAVLSLYASGRTTGIVLDSG 504
PA Y+A Q + +ASG+ T ++D G
Sbjct: 126 RCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.7 bits (91), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 42 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 143
D+V+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.9 bits (171), Expect = 3e-14
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Frame = +1
Query: 184 KTPTWVTRPRAREVSS--LXKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 357
+T T V EV S + + P E +I+NWD ME++ +TF +L + EHP+ +TE
Sbjct: 64 RTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTE 122
Query: 358 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVS 516
NP R MT+++FE +N+P++ I + S Y + + ++GIVL+ G+ S
Sbjct: 123 PLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAAS 177
Score = 36.7 bits (81), Expect = 0.002
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 27 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 152
F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.5 bits (145), Expect = 4e-11
Identities = 26/84 (30%), Positives = 50/84 (59%)
Frame = +1
Query: 253 HGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAM 432
+GII +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 433 YVAIQAVLSLYASGRTTGIVLDSG 504
Y+ QAV +A+ ++T +++D G
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIG 157
Score = 36.7 bits (81), Expect = 0.002
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +3
Query: 42 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 221
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 222 GILTXEV 242
I EV
Sbjct: 62 PIPGMEV 68
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 49.2 bits (112), Expect = 4e-07
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +1
Query: 244 PIEHGIITNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 411
PI+ G + +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 412 TFNSPAMYVAIQAVLSLYASGRTTGIVLDSG 504
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.9 bits (69), Expect = 0.059
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 102 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTXEVP 245
G+ PRA F ++ P H G+++ M KD G+E S +G + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 304 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 447
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.5 bits (58), Expect = 1.3
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +1
Query: 85 ARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRPRAREVSSLXKYPIEHGII 264
+ P P+ +PA SSRP V V + P R + + SL ++
Sbjct: 532 SHPAKPSNAQPADSSRPYAVFSQEENGEHVNLKAFPDHTLRVKDSKPESLGIDTVKQ--Y 589
Query: 265 TNWDDMEKIWHHTF-YNELRVAPEEHPVLL 351
T + D+E H F + E R PE PV+L
Sbjct: 590 TGYLDVEDDRHLFFWFFESRNDPENDPVVL 619
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 320 RSSL*KVWCQIFSMSSQLVMIPCSMGYFXSEDTSLALGLVTHVGVFLAHTDHHAL 156
R S+ K W +F + + G TSLAL L + + L++T H+L
Sbjct: 218 RKSVAKAWVSVFEKIIEKAKLEGVQGLEDLNSTSLALQLEHIMFMVLSYTTDHSL 272
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 346 LLTEAPLNPKANREKMTQIMFETFN 420
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 162 VMVGMGQKDSYVGDEAQSKRGILTXEV 242
+M+G +Y+G AQ KR +LT V
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARV 191
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +3
Query: 69 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 221
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 57 LVVDNGSGMCKAGFAG 104
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/46 (21%), Positives = 23/46 (50%)
Frame = +1
Query: 196 WVTRPRAREVSSLXKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE 333
++ + RA + YP G++ +W ++E + E+R+ P+
Sbjct: 229 YIHKDRAWLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,094
Number of Sequences: 5004
Number of extensions: 37905
Number of successful extensions: 131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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