Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30393
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.74 
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   2.3  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   3.0  
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 29   3.0  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   4.0  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   4.0  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              28   5.3  
SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)                    27   9.2  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 92  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 202
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP+   A W HP+   A W+H
Sbjct: 218 HPNKTQANWYHPNKTQANWNH 238



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W+H
Sbjct: 178 HPTKTQANWNHPSKTRANWNH 198



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP+   A W+HP    A W H
Sbjct: 228 HPNKTQANWNHPTKTQANWYH 248



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W+H
Sbjct: 78  HPTKTHANWNHPSKTRANWNH 98



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W HP    A W+H
Sbjct: 528 HPTKTQANWCHPTKTQANWNH 548


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 448 NVCGCDHLAGNVCGCDWHGNGRL 380
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W+H
Sbjct: 313 HPTKTQANWNHPSKTQANWNH 333



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 402 SHPHTLPARWSHPHTLPARWSH 467
           +HP    A W HP+   A W H
Sbjct: 282 NHPIKTQANWCHPNKTQANWCH 303



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W H
Sbjct: 383 HPTKTQANWNHPSKTQANWYH 403



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W+H
Sbjct: 423 HPTKTHANWNHPSKTWANWNH 443


>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 20  VFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFVYKP 136
           VFL   +S+TV + +  GKY P  YN   + ++ F + P
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYN--VTVIALFFFLP 168


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 270 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 359
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 457 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 329
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 270 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 359
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -3

Query: 442 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 362
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 405 HPHTLPARWSHPHTLPARWSH 467
           HP    A W+HP    A W+H
Sbjct: 158 HPTKTHANWNHPSKTRANWNH 178


>SB_14516| Best HMM Match : PH (HMM E-Value=6.8e-06)
          Length = 438

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 124 EWRNSRVNSVVLERSVLSSFGGQRHCQRQADCQKDTH 14
           E+R+ R NS V    +L+   G+R C+R     + T+
Sbjct: 231 EFRHRRRNSGVGTSEILTDCSGERSCKRSVTSNRSTN 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,761
Number of Sequences: 59808
Number of extensions: 243043
Number of successful extensions: 801
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)