Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30392
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.060
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30) 31 0.74
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 1.3
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 28 4.0
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_20508| Best HMM Match : Filament (HMM E-Value=0.037) 28 4.0
SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092) 27 6.9
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 27 6.9
SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 27 9.2
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 34.3 bits (75), Expect = 0.060
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +2
Query: 314 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGK 457
D +++ K + +LE + DL+ +KRKD+ I+DLN V D + K
Sbjct: 400 DELRKTKKKMQVQYEKLEHQLDDLKVQLKRKDVVIADLNKVVEDYKRK 447
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 32.7 bits (71), Expect = 0.18
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 311 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRV 439
ED + R + +RI RLE DL+ + +R SD+N+RV
Sbjct: 22 EDLMTRRFRGLEDRIGRLESTVSDLQLLQRRNGRFFSDINTRV 64
>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
Length = 3071
Score = 30.7 bits (66), Expect = 0.74
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +2
Query: 365 EDEKFD--LEYIVKRKDMEISDLNSRVNDLRGKFVKPTLKKVSK 490
++EKF L ++ RKD I +LN+++ L+G + K T ++++K
Sbjct: 997 QNEKFSETLNSVISRKDKAIDELNAKIRHLQGDYDK-TRRQLNK 1039
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +2
Query: 305 ANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVK 466
A+++ I+ + ++++++DE +L+ R+ EI DL +R+N+L +
Sbjct: 1352 ASKEYIEGQLESLKAQMSKIKDENENLKESDARRQQEILDLENRINELENMLAR 1405
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 308 NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDL 448
NED R + +R + LE+E DL + ++ + +++D +RVN L
Sbjct: 732 NEDA-SRQAAELRKRCSALEEEVEDLTAVKEKLEDDLADYPTRVNKL 777
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/24 (41%), Positives = 20/24 (83%)
Frame = +2
Query: 302 DANEDTIKRVCKDYHERIARLEDE 373
+ +E+ +++V +DY E+IARL++E
Sbjct: 144 EPDEEQLEQVRRDYEEQIARLQEE 167
>SB_20508| Best HMM Match : Filament (HMM E-Value=0.037)
Length = 722
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 290 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 427
+ + +NE + RV D E + L+ +K DLE I ++ + +L
Sbjct: 51 EELQTSNESELMRVRSDLEEMTSLLQSKKVDLEKIKEQNEKAAKEL 96
>SB_6360| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0092)
Length = 107
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 338 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGK 457
D + ++ L + DL+ V D ++ DLN++V+DL K
Sbjct: 26 DLNAKVHDLNTKVHDLDTKVHDLDTKVHDLNTKVHDLNTK 65
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 338 DYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVK 466
D + ++ L + DL V + ++ DLN++VNDL K K
Sbjct: 348 DLNTKVHDLNTKLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTK 390
>SB_35052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Frame = +2
Query: 314 DTIKRVCKDYHERIAR-LEDEKF---DLEYIVKRKDMEISDLNS 433
D I+R + ++R LE+ K +LE V +KDME++DLN+
Sbjct: 6 DKIRRKLESELAEVSRQLEEAKQQIQELEAAVHKKDMELNDLNA 49
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +2
Query: 311 EDTIKRVCKDYHERIARLE---DEKFDLEYIVKRKDMEISDLNSRVNDL 448
ED +++V K +A L+ +EK D E +++ + +++LN+++ DL
Sbjct: 1901 EDELEKVRKKEVSLLATLDTLREEKKDQEQMLQDNGIRLAELNTQIQDL 1949
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,495
Number of Sequences: 59808
Number of extensions: 176726
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -