Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30392
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i pr... 97 5e-21
AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4 ... 97 5e-21
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 93 1e-19
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 93 1e-19
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 91 6e-19
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 91 6e-19
Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical pr... 85 2e-17
AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1 ... 85 2e-17
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 41 5e-04
U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t pro... 40 0.001
U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t pro... 40 0.001
AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t pr... 37 0.007
AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t pr... 37 0.007
U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T prot... 35 0.040
U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle position... 35 0.040
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 34 0.052
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 32 0.21
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr... 32 0.28
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr... 32 0.28
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein. 32 0.28
AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical... 31 0.49
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 1.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 1.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 1.5
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 29 2.6
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 29 2.6
Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF039041-9|AAB94188.2| 194|Caenorhabditis elegans Troponin i
protein 4 protein.
Length = 194
Score = 97.5 bits (232), Expect = 5e-21
Identities = 57/142 (40%), Positives = 73/142 (51%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 269 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDL 448
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 449 RGKFVKPTLKKVSKYENKFAKL 514
RGKFVKPTLKKVSK E KF KL
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKL 155
>AB107583-1|BAD89381.1| 194|Caenorhabditis elegans troponin I 4
protein.
Length = 194
Score = 97.5 bits (232), Expect = 5e-21
Identities = 57/142 (40%), Positives = 73/142 (51%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+RK+ EVRKR+EEAS GF+TP
Sbjct: 16 ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75
Query: 269 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDL 448
++D NED ++ V + ER+ LE E +D+ YIV++KD EI++L VNDL
Sbjct: 76 QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYIVRQKDFEINELTIAVNDL 133
Query: 449 RGKFVKPTLKKVSKYENKFAKL 514
RGKFVKPTLKKVSK E KF KL
Sbjct: 134 RGKFVKPTLKKVSKTEGKFDKL 155
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 93.1 bits (221), Expect = 1e-19
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 269 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 446 LRGKFVKPTLKKVSKYENKFAK 511
LRGKFVKP+LKKVSKY+NKF K
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKK 158
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 93.1 bits (221), Expect = 1e-19
Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+ K+AEVRKR+EEA GF+TP
Sbjct: 17 EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76
Query: 269 XXXCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
N+D ++ ++++ D R+ +LE+EK+D+ Y+V + + EI+ L VND
Sbjct: 77 ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSLTIEVND 136
Query: 446 LRGKFVKPTLKKVSKYENKFAK 511
LRGKFVKP+LKKVSKY+NKF K
Sbjct: 137 LRGKFVKPSLKKVSKYDNKFKK 158
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 90.6 bits (215), Expect = 6e-19
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +2
Query: 95 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 275 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLR 451
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L +VNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 452 GKFVKPTLKKVSKYENKF 505
GKFVKPTLKKVSKY+NKF
Sbjct: 151 GKFVKPTLKKVSKYDNKF 168
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 90.6 bits (215), Expect = 6e-19
Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Frame = +2
Query: 95 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 274
K+AEVRKRMEEA+ GF+TP
Sbjct: 31 KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90
Query: 275 XCGKPKNIDDANED-TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLR 451
++D N+ + ++ +D R+ LE+EKFD+ + V + + EI+ L +VNDLR
Sbjct: 91 RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINFGVSQTEAEINQLTIQVNDLR 150
Query: 452 GKFVKPTLKKVSKYENKF 505
GKFVKPTLKKVSKY+NKF
Sbjct: 151 GKFVKPTLKKVSKYDNKF 168
>Z66562-5|CAA91466.1| 250|Caenorhabditis elegans Hypothetical
protein F42E11.4 protein.
Length = 250
Score = 85.4 bits (202), Expect = 2e-17
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 269 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 446 LRGKFVKPTLKKVSKYENKFAKL 514
LRGKFVKP+LKKVSKY+NKF K+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKM 171
>AB107358-1|BAD89379.1| 250|Caenorhabditis elegans troponin I 1
protein.
Length = 250
Score = 85.4 bits (202), Expect = 2e-17
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
Frame = +2
Query: 89 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 268
+ K+AEVRKR+EEA GF+TP
Sbjct: 30 EAKKAEVRKRLEEAGQKKQKK-GFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88
Query: 269 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
N+D ++ ++ + D R+ LE+EK+D+ +I + I+ LN VND
Sbjct: 89 AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHITTETETTINQLNIEVND 148
Query: 446 LRGKFVKPTLKKVSKYENKFAKL 514
LRGKFVKP+LKKVSKY+NKF K+
Sbjct: 149 LRGKFVKPSLKKVSKYDNKFKKM 171
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 41.1 bits (92), Expect = 5e-04
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +2
Query: 293 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSR 436
N + + +K K+ H+RI +LE EK+DLE +R++ ++ +LN R
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDMKELNER 1090
>U23523-11|AAP68942.2| 324|Caenorhabditis elegans Troponin t
protein 2, isoform b protein.
Length = 324
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 284 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDL-RGKF 460
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN R + R K
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 184
Query: 461 VKPTL 475
+K L
Sbjct: 185 LKKGL 189
>U23523-10|AAP68941.1| 428|Caenorhabditis elegans Troponin t
protein 2, isoform a protein.
Length = 428
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 284 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDL-RGKF 460
K +++ + +K K H RI +LE EK+DLE +R++ ++ +LN R + R K
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLKELNERQRQVARNKA 288
Query: 461 VKPTL 475
+K L
Sbjct: 289 LKKGL 293
>AF039039-6|AAO25996.1| 308|Caenorhabditis elegans Troponin t
protein 4, isoform b protein.
Length = 308
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2
Query: 320 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSR 436
+K K+ H+RI +LE +K+DLE +R++ ++ +LN R
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>AF039039-5|AAB94176.2| 347|Caenorhabditis elegans Troponin t
protein 4, isoform a protein.
Length = 347
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/39 (38%), Positives = 27/39 (69%)
Frame = +2
Query: 320 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSR 436
+K K+ H+RI +LE +K+DLE +R++ ++ +LN R
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEYDLKELNER 254
>U44759-1|AAA86906.1| 405|Caenorhabditis elegans troponin T
protein.
Length = 405
Score = 34.7 bits (76), Expect = 0.040
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND-LRGKFVKPTL 475
+K + H RI +LE EK+DLE +R+D ++ +L+ R R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U43282-4|AAA83615.1| 405|Caenorhabditis elegans Muscle positioning
protein 2 protein.
Length = 405
Score = 34.7 bits (76), Expect = 0.040
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 320 IKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND-LRGKFVKPTL 475
+K + H RI +LE EK+DLE +R+D ++ +L+ R R K +K L
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAARNKALKKGL 284
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 34.3 bits (75), Expect = 0.052
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 293 NIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDL 427
N + + +K K+ H+RI +LE EK+DLE +R++ + L
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDPKQL 253
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 347 ERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
E I L K + E ++K+KD+E+S + SR+ D
Sbjct: 1074 ELIEELNRHKHEQEQVIKKKDIELSSIQSRLED 1106
>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical
protein T10G3.5b protein.
Length = 1203
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/37 (37%), Positives = 27/37 (72%)
Frame = +2
Query: 392 IVKRKDMEISDLNSRVNDLRGKFVKPTLKKVSKYENK 502
+++ K+ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 435 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 470
>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical
protein T10G3.5a protein.
Length = 1205
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/37 (37%), Positives = 27/37 (72%)
Frame = +2
Query: 392 IVKRKDMEISDLNSRVNDLRGKFVKPTLKKVSKYENK 502
+++ K+ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 437 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
Length = 1205
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/37 (37%), Positives = 27/37 (72%)
Frame = +2
Query: 392 IVKRKDMEISDLNSRVNDLRGKFVKPTLKKVSKYENK 502
+++ K+ EIS+ +S +NDL+ K + + KK +KY+N+
Sbjct: 437 LLEEKNKEISERDSSINDLKEKLAE-SEKKATKYKNE 472
>AL110478-10|CAE17956.3| 758|Caenorhabditis elegans Hypothetical
protein Y26D4A.13 protein.
Length = 758
Score = 31.1 bits (67), Expect = 0.49
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = +2
Query: 311 EDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPTLKKVS 487
ED + R+C+ Y + + R+ + + +LEY K K+ + + + + + K + L K++
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEY-EKEKNRALQETINNSSSVDSKINQEKLNKIN 728
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 299 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
D+ E I+ V + + RLE+EK DLE ++ + E+S + R ND
Sbjct: 1072 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI-GRGND 1119
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 299 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
D+ E I+ V + + RLE+EK DLE ++ + E+S + R ND
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI-GRGND 1192
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 299 DDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVND 445
D+ E I+ V + + RLE+EK DLE ++ + E+S + R ND
Sbjct: 1145 DELVEHKIREVNDRWKRELERLENEKDDLERRIRELEDELSQI-GRGND 1192
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPT 472
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPT 472
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPT 472
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 446 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 505
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 299 DDA--NEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPT 472
DDA D + + E+ +L+ E ++ + K+ E +DL + ++DLRG F K T
Sbjct: 686 DDAARKNDALLEDVATWQEKYEQLKMELEEMNRRGQEKEREEADLRALLDDLRGNFDKLT 745
>Z68159-5|CAA92288.2| 472|Caenorhabditis elegans Hypothetical
protein C33D9.5 protein.
Length = 472
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 317 TIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVN 442
T KR+ + YH I L++ + Y +KRK + + + +N
Sbjct: 200 TTKRLMEHYHIEIDNLKEAHSEEMYKIKRKYSTLEEYSEEIN 241
>Z70287-1|CAA94302.3| 294|Caenorhabditis elegans Hypothetical
protein R09E10.1 protein.
Length = 294
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/71 (23%), Positives = 29/71 (40%)
Frame = +2
Query: 290 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKP 469
+N+ +KRV K + + + D K DL IVK++ E + KF+K
Sbjct: 200 RNLQTQGPQHLKRVKKFLYGQYPKYVDMKRDLLKIVKQQKPEAQSVRDESAQAISKFIKE 259
Query: 470 TLKKVSKYENK 502
Y ++
Sbjct: 260 KYVNAKIYASR 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,474,187
Number of Sequences: 27780
Number of extensions: 133677
Number of successful extensions: 643
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -