Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30392
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein ... 33 0.086
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 32 0.20
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 32 0.20
At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit... 29 1.4
At5g57970.1 68418.m07253 methyladenine glycosylase family protei... 28 3.2
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 28 3.2
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 4.3
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 28 4.3
At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protei... 27 5.7
At5g57410.1 68418.m07172 expressed protein 27 9.9
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 27 9.9
>At3g21810.1 68416.m02750 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 33.5 bits (73), Expect = 0.086
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 314 DTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKF--VKPTLKKVS 487
+ ++ KD + L D+K LE V+RK E+ L SR+ +L + K ++++
Sbjct: 146 NVLEEQLKDVEMDVKMLTDDKLRLEASVERKAHEVDILTSRIQELETQLDREKDECRRIT 205
Query: 488 KYENKFAK 511
KF K
Sbjct: 206 SSSKKFVK 213
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +2
Query: 290 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKP 469
+++D+ NE T +D ++ R+ + +RK + SDL ++VNDL+G+
Sbjct: 205 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 262
Query: 470 TLKKVSKYENKF 505
LK++S +K+
Sbjct: 263 LLKQLSNMNHKY 274
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +2
Query: 290 KNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKP 469
+++D+ NE T +D ++ R+ + +RK + SDL ++VNDL+G+
Sbjct: 199 EDLDEENETTGSLKPEDV-KKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEH-SS 256
Query: 470 TLKKVSKYENKF 505
LK++S +K+
Sbjct: 257 LLKQLSNMNHKY 268
>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
family protein low similarity to SP|P83326
Pectinesterase inhibitor (Pectin methylesterase
inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 145
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 284 KPKNIDDANEDTIKRVCKDYHERIARLED 370
K KN++ A EDT+ K+Y + +A+L+D
Sbjct: 53 KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81
>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 347
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +3
Query: 237 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSL 398
+++ L+ +S R G+ + TPT+ + K T+NA+ +L+ N++L
Sbjct: 40 SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93
>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to LACK protective antigen (GI:13625467)
[Leishmania donovani]
Length = 804
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 294 TLTTPTKILLRGFAKTTMNASLVLKMKNSIWNTSLKGKIW 413
TLT TK+ G ++ + AS + + + S+WNTS W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 353 IARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPT 472
++ L K L ++++KD EIS+ NS + K VK T
Sbjct: 117 MSELHKSKRQLMELLEQKDAEISEKNSTIKSYLDKIVKLT 156
>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
contains tubulin-tyrosine ligase family domain,
Pfam:PF03133
Length = 867
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 314 DTIKRVCKDYHERIARLEDEKFDLEYIV 397
+T ++C+ Y E A + KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701
>At3g07790.1 68416.m00951 DGCR14-related similar to DGCR14 protein
(DiGeorge syndrome critical region 14) (ES2 protein)
(Swiss-Prot:Q96DF8) [Homo sapiens]
Length = 508
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 299 DDANEDTIKRVC-KDYHERIARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGK 457
+DA + I+++ +DY I +L D ++ + R ++I D ++ + RGK
Sbjct: 50 EDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKTRDPIQIRDAQLKIIERRGK 103
>At5g57410.1 68418.m07172 expressed protein
Length = 373
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/54 (27%), Positives = 32/54 (59%)
Frame = +2
Query: 353 IARLEDEKFDLEYIVKRKDMEISDLNSRVNDLRGKFVKPTLKKVSKYENKFAKL 514
IARLE + LE ++++KD EI+ + +R +K ++K+ + ++F ++
Sbjct: 95 IARLEAKVERLEALLQQKDREIATI-TRTEAKNTAALKSQIEKLQQERDEFQRM 147
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 284 KPKNIDDANEDTIKRVCKDYHERIARLEDEKFDLEYIVKRKDMEISDLN 430
+P + + + +K +C+DY + + K + E KR+ + DL+
Sbjct: 448 RPDGVHTLDREMVKMICRDYDVEVLDADSVKVE-EMAKKRQTFDEEDLD 495
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,115,724
Number of Sequences: 28952
Number of extensions: 124587
Number of successful extensions: 456
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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