Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   8.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 109 FRHHKQGSKFFGVASCIF*DEYAFLDW 29
           ++  K GSK      C+F   Y   DW
Sbjct: 769 YKTQKTGSKIHLFVKCVFLMGYQIFDW 795


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -1

Query: 339 CTISRNTGMFASISGWVASSGSLQKLVSTDNATDLYTDGGQ 217
           C I      F  +  WV S GSL    +  ++  L    G+
Sbjct: 144 CNIPSFVADFVRVEAWVGSDGSLYNHTANYDSKYLVLPSGE 184


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 440 LIDVGAIKKMSEIYSHQS 493
           ++D+G +  + E+ SHQS
Sbjct: 321 MLDMGFLGDVEEMLSHQS 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,189
Number of Sequences: 336
Number of extensions: 2628
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)