Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    29   0.55 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   2.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   5.1  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   5.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   6.7  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    25   6.7  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   8.9  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = +2

Query: 74  TEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDDCPPSVYKSVALS 253
           T+   A F + K++ S   +S   KA         + KLL++NS + + P  + K   L 
Sbjct: 500 TQDSNAAFALAKILISVAPHSIFTKAFPSNRAIHPMSKLLSTNSADTEYPILLGKFEVLL 559

Query: 254 VLTNFCNEPE 283
            LTN  +  E
Sbjct: 560 ALTNLASHDE 569


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 245 ALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXXXXXXXXLIIISEAYTCLQCIAE 418
           A+S+  N C   + +        IP+  +I+Q+S         I++S+AY+CL+ I E
Sbjct: 522 AISLAANCCKFLDESNASAAEEIIPLLSNILQSSDT-------IVVSKAYSCLETIIE 572


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
 Frame = +2

Query: 47   LILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSN-SVEDDCP 223
            L +   +SD EK+   + +   + S    S  +  L E +   FL+K L S+   EDD  
Sbjct: 1189 LTMGTLKSDAEKWC--YYIGSYIMS----SPTEGILPEHVRIPFLRKCLPSDEGNEDDES 1242

Query: 224  PSVYKSVALSVLTNFCNEPELATHP 298
             SV KS A +++T+F       T P
Sbjct: 1243 SSVVKS-ANAIITSFLESGLALTIP 1266


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 339 CTISRNTGMFASISGWVASSGSLQKLVSTDNATDLY 232
           C I++  G + S  G  AS G LQ  +   N TDL+
Sbjct: 543 CEIAQVEGTYESYEGSPASQGILQYDMWNVNPTDLW 578


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 215 DCPPSVYKSVALSVLTNFCNE 277
           D P     S+ L+++T+FCNE
Sbjct: 333 DTPVGDNSSIVLNLITDFCNE 353


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 29  PIKKCI-LILKNARSDTEKFAALFMVTKLVKSKDCN 133
           P K+ I L+ + A+ DTE+   LF+V++L +   C+
Sbjct: 250 PKKQLIRLLAEYAKDDTERQVLLFLVSRLGQRAFCD 285


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 242 VALSVLTNFCNEPELATHPEMLANIPVFLD 331
           V  SV  N  N P   ++P  L+NIP+ L+
Sbjct: 143 VVASVNPNSNNSPTFYSNPPALSNIPIPLN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,977
Number of Sequences: 5004
Number of extensions: 40640
Number of successful extensions: 91
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)