Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0786 - 20540061-20542106                                         30   1.3  
06_03_0592 + 22585546-22588573,22588680-22589032                       28   3.9  
12_01_0030 + 262452-263210,263332-263575,263867-264165                 28   5.1  
06_01_0917 - 7077934-7080339                                           27   6.8  
03_03_0012 + 13737898-13740031,13740347-13740486                       27   8.9  

>10_08_0786 - 20540061-20542106
          Length = 681

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 339 CTISRNTGMFASISGWVASSGSLQKLVSTDNATDLYTDGG 220
           CT +RN  M AS+ G +   G    +V+  +  D+Y   G
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNG 258


>06_03_0592 + 22585546-22588573,22588680-22589032
          Length = 1126

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 188 LLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLAN 313
           +LTSN + D+ PPS+  S +L  + +  N     + PE LAN
Sbjct: 201 VLTSNRLTDEIPPSLGSSFSLRYV-DLGNNDITGSIPESLAN 241


>12_01_0030 + 262452-263210,263332-263575,263867-264165
          Length = 433

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = +2

Query: 65  RSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDDCPPSVYKSV 244
           RS    F A    T ++   + N   +K  F         +   SNS +  C P    + 
Sbjct: 274 RSYHANFLASANGTNVLNGGEANPPVRKLFFAEFWDSQSGRFNKSNS-KPICSPVQNYNA 332

Query: 245 ALSVLTNFCNEPELATHP 298
               L +FC+EP    HP
Sbjct: 333 CFGRLCSFCDEPRTILHP 350


>06_01_0917 - 7077934-7080339
          Length = 801

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 203 SVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPV 322
           +V DDC  S        +L + C+   LA HPE +A +PV
Sbjct: 195 AVNDDCFVSAKGRTKRQLLLDLCHL--LAQHPEEVAGLPV 232


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 119 FLPVSSP*---TGQQIFRCRFLHFLR*VCIS 36
           FLP SSP    T  +I +C  +HFL  VC+S
Sbjct: 220 FLPQSSPDDIITIDKILQCNEVHFLSDVCLS 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,504
Number of Sequences: 37544
Number of extensions: 243181
Number of successful extensions: 515
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)