Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)         93   1e-19
SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.43 
SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)            31   0.74 
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49864| Best HMM Match : Ldl_recept_b (HMM E-Value=9)                27   9.2  
SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)                     27   9.2  

>SB_22322| Best HMM Match : Neurochondrin (HMM E-Value=2.9e-08)
          Length = 561

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 48/157 (30%), Positives = 86/157 (54%)
 Frame = +2

Query: 17  DVSEPIKKCILILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLT 196
           D    ++KCI++LK+ ++D E+FAAL +VT+LV+S   +S  ++ LF A+GF+F+ +LL 
Sbjct: 15  DSGGALQKCIMMLKSVKNDNERFAALLLVTQLVQSDSISSEQRRELFNAVGFKFINRLLN 74

Query: 197 SNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIVQTSXXXXXXXXLI 376
           + +V  DCP  +++S+ +++LT F  + EL    +M+  I    D +             
Sbjct: 75  TTTVPADCPAGMFRSLGMTMLTCFSTDKELLFCQQMVTKIQHLNDAIVKEGEESS----- 129

Query: 377 IISEAYTCLQCIAEHEAGQRALIDVGAIKKMSEIYSH 487
           I+++AY  L   A    G   LI+   +  +  +  H
Sbjct: 130 IVADAYQILTAYASTAEGCDRLIEGNTVLALCYVIRH 166


>SB_19926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 41  CILILKNARSDTEKFAALFMVTKLVK-SKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDD 217
           CI IL+N     +    +F +T +V  S+DC  +A K L   +       LLTSNS    
Sbjct: 38  CIDILRNVTKTVKSGTEVFKLTVVVTLSRDCGRSANK-LMRKLAVDASNLLLTSNSCSPG 96

Query: 218 CP 223
            P
Sbjct: 97  DP 98


>SB_46486| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.7)
          Length = 703

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 161 AIGFQFLKKLLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELAT 292
           AI  + LKKL TS ++  D P S+ ++V   V+ +FC      T
Sbjct: 160 AIEDKDLKKLKTSKALSPDTPSSLLRNVWFHVVLHFCRRARSET 203


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 243 WHYLYSPTSVMNLNLQPIQKCWQTYQYSLI*YKHQ-IMMTTMITLSLLVKHTPAY 404
           +HY Y P +++ +N  P+     TY +    + HQ I + T+IT+ +L   T  Y
Sbjct: 623 YHYYYQPITIVTINKSPLSP--STYFH----HHHQHITIITIITIKILPSSTSNY 671


>SB_53725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 330 SRNTGMFASISGWVASSGSLQKLVSTDNATDLYTDGG 220
           +R  G+   + G +     + KLV  +N+T+ Y DGG
Sbjct: 31  ARANGLQGRLDGDIVIDSLILKLVELENSTEAYKDGG 67


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 101 VTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDDCPPSVYKSVALSVLT 262
           VTK   +KD    A+ AL +AI FQ  + L+   +VE D   S  K+V  ++ T
Sbjct: 271 VTKKTLNKDQAVIARDALAKAIFFQLFEYLVELCAVETDALISNIKAVNSTMAT 324


>SB_49864| Best HMM Match : Ldl_recept_b (HMM E-Value=9)
          Length = 306

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +2

Query: 176 FLKKLLTSNSVEDDCPPSVYKSVALSVLTNFCNEPELATHPEMLANIP 319
           FL++L TS      CP  V++++  S++ +  + PEL    E +   P
Sbjct: 51  FLERLQTSEEAST-CPKEVFQAIVQSLVVDTDDTPELIPVAEQVGARP 97


>SB_30246| Best HMM Match : IspA (HMM E-Value=0.39)
          Length = 1502

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 462 FIAPTSIRALWPASCSAMHCRQVYASLIMIR 370
           F A   +R+LW  S S   CR+  A  ++IR
Sbjct: 877 FEAERELRSLWRGSASRYQCRRKNAREVLIR 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,302,915
Number of Sequences: 59808
Number of extensions: 291899
Number of successful extensions: 585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)