Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37140-1|CAA85496.1|  161|Caenorhabditis elegans Hypothetical pr...    30   0.85 
Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm rece...    29   2.6  

>Z37140-1|CAA85496.1|  161|Caenorhabditis elegans Hypothetical
           protein ZK899.1 protein.
          Length = 161

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
 Frame = +2

Query: 59  NARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDDCPPSV-- 232
           +AR  T K A+   VT L +SK   S  K+A    I  QFL +  T + V+ +    +  
Sbjct: 15  SARPPTSKHAS---VTNLERSKSSTSLFKRA----ISLQFLARK-TDSLVDREKAAYIKM 66

Query: 233 -YKSVALSVLTNFCNEPELATHPEMLANIP 319
            YK  A  V+   C  P+   HP+    +P
Sbjct: 67  RYKDTAKYVIWPICRLPDKIEHPKHAPLVP 96


>Z75538-2|CAA99840.1|  476|Caenorhabditis elegans Hypothetical
           protein F20G4.2 protein.
          Length = 476

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 24/97 (24%), Positives = 44/97 (45%)
 Frame = +2

Query: 47  LILKNARSDTEKFAALFMVTKLVKSKDCNSTAKKALFEAIGFQFLKKLLTSNSVEDDCPP 226
           ++ KN R+ T+K   L +   +V  K  NS+ K  L + I  + +KKL   +   DD   
Sbjct: 29  IVQKNERNSTKKKKKLKLAV-VVPRKSSNSSIKSILKQEIDSENVKKLDHRDKYSDD-EI 86

Query: 227 SVYKSVALSVLTNFCNEPELATHPEMLANIPVFLDIV 337
            +     + +L N  +  E+ T    +A I +   ++
Sbjct: 87  QIDDGDDVDIL-NVVSTSEIKTPTSSMAKIRIITPVI 122


>AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm
           receptor protein 46 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 147 FFAVELQSLLFTSFVTINRAANFSVSLLAFFKMSMHFLIGSDTSPIVT 4
           FF++  Q+ LF   +++   A F + +LAFF +   F   S  +PI T
Sbjct: 75  FFSLNTQNSLFLVQISVAVYAGFYLFILAFFVVQFVFRYVSLVNPIST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,567,886
Number of Sequences: 27780
Number of extensions: 229025
Number of successful extensions: 514
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)