Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30391
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.81 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   10.0 

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 114 TSFVTINRAANFSVSLLAFFKMSMHFLIGSD 22
           TSFV  NRA  F +   +  K+S   ++G D
Sbjct: 354 TSFVLNNRAGRFLILTESDTKLSSQGILGED 384


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -2

Query: 335 LYQGILVCLPAFLDGLQV---QVHYR 267
           LY G+ +CL  F   L V    +H+R
Sbjct: 277 LYYGVSICLVTFASALAVVTLNLHHR 302


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 341 FVLYQGILVCLPAFLDGLQVQVHYRS 264
           ++L+  ILV L  ++    + VH+RS
Sbjct: 315 YLLFTMILVTLSIWITVCVLNVHFRS 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,112
Number of Sequences: 438
Number of extensions: 2522
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)