Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30390
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   1.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   2.9  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   3.8  
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces...    26   3.8  
SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    25   5.1  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   8.9  
SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...    25   8.9  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.9  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   8.9  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = -2

Query: 476 LPPSTLPRGQAHPLF----L*ARQAPSCG 402
           LPPS LPR   HPL       A+Q+PS G
Sbjct: 52  LPPSHLPRSTLHPLLSQQQQPAQQSPSLG 80


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 155  HCAAKNVVRACWKTGPATW*LLTIVVVNAGSHAQNI 48
            HC A N  ++ W+     W   T  ++  G H  NI
Sbjct: 1673 HCNAFNFAKSHWEPVIEPWTFSTTAIMKDGMHEVNI 1708


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 328 TLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGC 444
           T A+  P P   N   S ++  HT+ Q    RA  N  C
Sbjct: 223 TQASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQPNVNC 261


>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 161 IAHCAAKNVVRACWKTGPATW 99
           IAHC+A+  V + +  G ATW
Sbjct: 202 IAHCSAQGKVGSGFDVGAATW 222


>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 451 AKRIPCFCRHDKPLPVVQYGKPSLXMSPYYCSKVAV 344
           A  +PC   +D P PV +Y    + +S    SK  V
Sbjct: 21  ASLLPCHISYDGPAPVFEYFHDKIQISNNTHSKTTV 56


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = -1

Query: 201 LVGSIGWP*VIAGDRTLRS-QECSQGLLEDRPRYLVAVDYSS 79
           ++  +G P ++    TLRS ++ +QGL +D+ RY +  D+SS
Sbjct: 97  VIKQVGQP-LLLHQITLRSYRDRTQGLSKDQFRYALWPDFSS 137


>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 359 TVIWGHXKTGLTILNHRKGLVVPTKTRD 442
           T I G    G     +RKGL+VP+ T D
Sbjct: 51  TTIGGTRIIGRLTCGNRKGLLVPSSTTD 78


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 292 WKVLLXEXGGN----PTLATEIPQPYYSNMGTSXDWAYH 396
           W +L    G N    P   +E P     N+G S +WAY+
Sbjct: 516 WSMLGSAVGQNGNVGPRQISEEPMSIIFNLGISNNWAYY 554


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 221 MTSSSSELVPPDRLSPIV 274
           +  +S E VPPD L P+V
Sbjct: 381 LAQASHEFVPPDALEPLV 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,979
Number of Sequences: 5004
Number of extensions: 33902
Number of successful extensions: 85
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)