Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30390
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 36 0.015
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 34 0.059
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 32 0.24
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 29 1.7
09_04_0464 + 17820164-17820181,17820972-17821065,17821251-178214... 29 2.2
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 29 2.9
03_05_0039 - 20125473-20126222 29 2.9
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 36.3 bits (80), Expect = 0.015
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 4/133 (3%)
Frame = +1
Query: 127 ALTTFLAAQCAI--AGD--HLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDW 294
A T+F+A + AGD + + DA + YD+I LS+ +
Sbjct: 15 AATSFVAMLACVQAAGDESYTFMKDAVQSP-QVSYYDYIIVGGGTAGCPLAATLSQ--RF 71
Query: 295 KVLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLGG 474
+VLL E GG+P I NM D T P A R G R +VLGG
Sbjct: 72 RVLLLERGGSPYDDERI-----GNMTRFADTLSDTSPSSPAQRFVSEDGVINSRPRVLGG 126
Query: 475 SSSXNLMFYVRGN 513
S N FY R +
Sbjct: 127 GSCINAGFYTRAS 139
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 34.3 bits (75), Expect = 0.059
Identities = 28/80 (35%), Positives = 34/80 (42%)
Frame = +1
Query: 274 LSEISDWKVLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWP 453
LSE S +VLL E GG P + Y+ D T P+ A R G
Sbjct: 75 LSERS--RVLLLERGGLPYGNRNVSSEYHF-----ADALADTSPRSPAQRFVSEDGVVNA 127
Query: 454 RGKVLGGSSSXNLMFYVRGN 513
R +VLGG S N FY R +
Sbjct: 128 RARVLGGGSCLNAGFYTRAS 147
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 32.3 bits (70), Expect = 0.24
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 3/102 (2%)
Frame = +1
Query: 217 NYDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNPTLATEIPQPYYSNMGTSX---DW 387
+Y++I LSE S +VLL E GG P Y+NM + D
Sbjct: 53 SYNYIVIGGGTAGCPLAATLSEHS--RVLLLERGGLP----------YANMSSEQHFTDA 100
Query: 388 AYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSXNLMFYVRGN 513
T P A R G R +VLGG S N FY R +
Sbjct: 101 LADTSPASPAQRFISEDGVVNARARVLGGGSCLNAGFYTRAS 142
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 29.5 bits (63), Expect = 1.7
Identities = 29/98 (29%), Positives = 39/98 (39%)
Frame = +1
Query: 220 YDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHT 399
YD+I LS+ +KVLL E GG+P I ++ + D
Sbjct: 50 YDYIIVGGGTAGCPLAATLSQ--KYKVLLLERGGSPYGNRNISHLENFHICLADDSP--N 105
Query: 400 EPQEGACRAYKNKGCAWPRGKVLGGSSSXNLMFYVRGN 513
P +G G R KVLGG +S N FY R +
Sbjct: 106 SPSQGFI---STDGVINARAKVLGGGTSVNAGFYSRAD 140
>09_04_0464 +
17820164-17820181,17820972-17821065,17821251-17821429,
17821959-17822009,17822683-17822739,17822854-17822974,
17823187-17823253,17823342-17823383,17823629-17823734,
17823864-17823974,17824248-17824319,17824423-17824524,
17824597-17824758,17824961-17825119
Length = 446
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 141 ECSQGLLEDRPRYLVAVDY 85
+C+ GL ED+PRY++ V Y
Sbjct: 231 QCTAGLPEDKPRYVMGVGY 249
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/74 (28%), Positives = 31/74 (41%)
Frame = +1
Query: 292 WKVLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLG 471
+KVLL E GG+P + ++G S + P + G R +VLG
Sbjct: 73 YKVLLLERGGSPYGNRNVSYMENFHIGLS-----NMAPDSASQAFISTDGVINARARVLG 127
Query: 472 GSSSXNLMFYVRGN 513
G + N FY R +
Sbjct: 128 GGTCINAGFYSRAS 141
>03_05_0039 - 20125473-20126222
Length = 249
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1
Query: 436 KGCAWPRGKVLGGSSSXNLMFY 501
+GCA GKVLGGS S FY
Sbjct: 223 RGCAKEGGKVLGGSCSLRYDFY 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,489,543
Number of Sequences: 37544
Number of extensions: 262202
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -