Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30390
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  

>SB_59581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 36/100 (36%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +1

Query: 220 YDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNP-TLATEIPQPYYSNM-GTSXDWAY 393
           +D++            NRLS   D KVLL E G    T    +P     N+     +W Y
Sbjct: 164 HDYVICGAGSAGCVLANRLSADPDSKVLLLEAGPKDRTWKIHMPAALIYNLCDDKYNWYY 223

Query: 394 HTEPQEGACRAYKNKGCAWPRGKVLGGSSSXNLMFYVRGN 513
           HT PQ    +   N+    PRG+V GGSSS N M Y+RG+
Sbjct: 224 HTAPQ----KHMNNRVMYCPRGRVWGGSSSLNAMVYIRGH 259


>SB_9124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 170 ITYGQPMLPTRFSKI----QTMTSSSSELVPPDRLSPIVLAKYLTGKC 301
           +TY  P LPT F KI     T+TSS+++    D    I+L K     C
Sbjct: 141 VTYYNPDLPTHFLKITQAESTVTSSTTQSDDDDEEDQIILKKTSFSVC 188


>SB_53723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 709

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 352 PYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRG-KVLGGSSSXNLMFYVRGNK 516
           P   N+  S   A H E ++ AC     KG   P+G K++   S+ ++    +G K
Sbjct: 497 PTPQNIPASAHVATHVEGRKRACVLCSKKGKTTPKGYKIMSARSAKSVSVVKKGRK 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,998,781
Number of Sequences: 59808
Number of extensions: 281493
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)