Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30390
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    79   2e-17
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   10.0 

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 79.4 bits (187), Expect = 2e-17
 Identities = 45/130 (34%), Positives = 63/130 (48%)
 Frame = +1

Query: 127 ALTTFLAAQCAIAGDHLWPADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLL 306
           AL  F  A   + G+      ++   + D +YDFI             RLSE+S+WKVLL
Sbjct: 40  ALLNFFVATSPVIGEPCQRVHSSR--IPDLSYDFIVVGGGAARAVVAGRLSEVSNWKVLL 97

Query: 307 XEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSX 486
            E G +     EIP      +G   DW Y+T  +  AC +     C WPRGK LGG++  
Sbjct: 98  LEAGPDEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLS-TGGSCYWPRGKNLGGTTLH 156

Query: 487 NLMFYVRGNK 516
           + M Y RG++
Sbjct: 157 HGMAYHRGHR 166


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 236 SELVPPDRLSPIVLAKYL 289
           +E++PP  L+  +L KYL
Sbjct: 286 AEIIPPTSLTVPLLGKYL 303


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 236 SELVPPDRLSPIVLAKYL 289
           +E++PP  L+  +L KYL
Sbjct: 299 AEIIPPTSLAIPLLGKYL 316


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 403 VQYGKPSLXMSPYYCSKVAVSRLP 332
           V Y KPS      +  K+ + RLP
Sbjct: 322 VHYRKPSTHKMAPWVRKIFIRRLP 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,144
Number of Sequences: 438
Number of extensions: 2782
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)