Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30390
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R...    36   0.012
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored...    30   0.80 
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored...    30   1.1  
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored...    30   1.1  
At5g23720.1 68418.m02780 dual specificity protein phosphatase fa...    29   2.5  
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    27   5.7  
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    27   5.7  
At1g69800.1 68414.m08031 CBS domain-containing protein low simil...    27   5.7  
At2g18950.1 68415.m02212 homogentisate phytylprenyltransferase f...    27   7.5  
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored...    27   7.5  
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored...    27   9.9  
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi...    27   9.9  

>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
           (R)-oxynitrilase, putative similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|52707];
           contains Pfam protile PF00732 GMC oxidoreductase
          Length = 552

 Score = 36.3 bits (80), Expect = 0.012
 Identities = 34/111 (30%), Positives = 48/111 (43%)
 Frame = +1

Query: 184 ADATDKVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNPTLATEIPQPYYS 363
           ++ATD   ED  YD+I              LS+   ++VLL E GG P     +   +  
Sbjct: 43  SNATDFASED-YYDYIIVGGGTAGCPLAATLSQ--SFRVLLLERGGVPYNRPNV-MSHDG 98

Query: 364 NMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGSSSXNLMFYVRGNK 516
            + T  D      P +        +G    RG+VLGGSS+ N  FY R +K
Sbjct: 99  FLTTLTDVNNFDSPAQSFI---SEEGVPNARGRVLGGSSAINAGFYSRADK 146


>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 501

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 2/113 (1%)
 Frame = +1

Query: 181 PADATD-KVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNPTLATEIPQPY 357
           P   TD K +   ++D+I              LSE   + VL+ E GG+P     + +  
Sbjct: 2   PYMTTDAKEVSGKSFDYIVVGGGTAGCSLAATLSE--KYSVLVIERGGSPFGDPLVEERK 59

Query: 358 YSNMGTSXDWAYHTEPQEGACRAYKN-KGCAWPRGKVLGGSSSXNLMFYVRGN 513
           Y   G S     +T+      +++ +  G    RG+VLGGSS+ N  FY R +
Sbjct: 60  Y--FGYSL---LNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRAS 107


>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 582

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 298 VLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGS 477
           VL+ E GG+P        P  ++MG S +   +  P   +       G    R +VLGG 
Sbjct: 97  VLVLERGGSP-----YENPTATDMGNSVNTLLNNTPNSWSQLFISEDGVYNTRPRVLGGG 151

Query: 478 SSXNLMFYVR-GN 513
           S  N  FY R GN
Sbjct: 152 SVINGGFYSRAGN 164


>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 503

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
 Frame = +1

Query: 181 PADATD-KVLEDPNYDFIXXXXXXXXXXXXNRLSEISDWKVLLXEXGGNPTLATEIPQPY 357
           P   TD K +   ++D+I              LSE   + VL+ E GG+P     +    
Sbjct: 23  PYMTTDPKEVSGKSFDYIVVGGGTAGCSLAATLSE--KYSVLVIERGGSPFGDPLVEDKK 80

Query: 358 YSNMGTSXDWAYHTEPQEGACRAYKN-KGCAWPRGKVLGGSSSXNLMFYVRGN 513
           Y   G S     +T+      +++ +  G    RG+VLGGSS+ N  FY R +
Sbjct: 81  Y--YGYSL---INTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAINGGFYSRAS 128


>At5g23720.1 68418.m02780 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain; contains TG
           acceptor splice site at intron 9
          Length = 929

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 143 WLRNVRSPAITYGQPMLPTRFSKIQTMTSSSSE 241
           WL  VR  + TYG    P R  +I  M +S+ E
Sbjct: 59  WLDLVRKRSATYGSSGFPHRLHRIDDMVTSAGE 91


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 444 RLATW*GARRKQQHXFDVLRS 506
           +LA W  A++K+Q  FD+LRS
Sbjct: 332 QLAIWVDAKQKKQKLFDILRS 352


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 444 RLATW*GARRKQQHXFDVLRS 506
           +LA W  A++K+Q  FD+LRS
Sbjct: 195 QLAIWVDAKQKKQKLFDILRS 215


>At1g69800.1 68414.m08031 CBS domain-containing protein low
           similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
           gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
           sapiens}; contains Pfam profile PF00571: CBS domain
          Length = 447

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 123 LEDRPRYLVAVDYSSR*RWVARPKHLEALFSDKTLTTS 10
           L+ R RYL  +DYSS   WV     L A+    T  T+
Sbjct: 95  LDWRERYLGIIDYSSIILWVLESAELAAIALSATSATA 132


>At2g18950.1 68415.m02212 homogentisate phytylprenyltransferase
           family protein (HPT1) / tocopherol phytyltransferase
           family protein (TPT1) identical to gi:17104828; contains
           Pfam profile PF01040: UbiA prenyltransferase family;
           identical to cDNA tocopherol polyprenyltransferase
           (TPT1) GI:17104827
          Length = 393

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 444 ASLVFVGTTSPFLWFSMVSPV 382
           A  + VG TSPF+W  ++S V
Sbjct: 327 AVAILVGATSPFIWSKVISVV 347


>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 572

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +1

Query: 298 VLLXEXGGNPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKVLGGS 477
           VLL E G +P     I +   S  G +      + P +   R     G    R +VLGG 
Sbjct: 70  VLLLERGDSPYNNPNITR--LSAFGAALSDLSESSPSQ---RFVSEDGVINARARVLGGG 124

Query: 478 SSXNLMFYVR 507
           S+ N  FY R
Sbjct: 125 SALNAGFYTR 134


>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 586

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = +1

Query: 298 VLLXEXGG----NPTLATEIPQPYYSNMGTSXDWAYHTEPQEGACRAYKNKGCAWPRGKV 465
           VL+ E GG    NPT AT+I      N  T+     +T P+  +       G    R +V
Sbjct: 70  VLVLERGGAPYDNPT-ATDI-----ENFATTLS---NTSPKSWSQLFISEDGVYNTRARV 120

Query: 466 LGGSSSXNLMFYVR 507
           LGG S  N  FY R
Sbjct: 121 LGGGSVLNAGFYTR 134


>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1038

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 185 PMLPTRFSKIQTMTSSSSELVPPD 256
           P +P+R S+I   +SSSS  V PD
Sbjct: 19  PKIPSRNSRISIKSSSSSSKVRPD 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,272,720
Number of Sequences: 28952
Number of extensions: 190081
Number of successful extensions: 455
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)