Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30389
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    50   4e-08
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   2.6  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   3.5  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   4.6  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   8.1  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   8.1  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 50.4 bits (115), Expect = 4e-08
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
 Frame = +1

Query: 94  FQMFDTTKSGYIDVLKISTILNTMGQLFDDSELQALIDENDPENSGKINFDGFCNIASHF 273
           F ++D   SG +D + +   L  +  L    EL   +         KI F+ F  I S  
Sbjct: 17  FSVYDWEGSGQMDAMDLGNALRALN-LNPTIELIGKMGGTQKRGEKKIKFEEFLPIFSQV 75

Query: 274 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAALDDKLSNADLDGIIAEI--DT 447
            +E++    +  L E  +LYD+  +G +  + L   L AL ++L + +LD ++ +     
Sbjct: 76  KKEKEQGCFEDFL-ECLKLYDKNEDGTMLLAELTHSLTALGERLDDVELDNVMKDCMDPE 134

Query: 448 DGSGTVDFDEFMEMM 492
           D  G + +  F++ M
Sbjct: 135 DDDGNIPYAPFLKKM 149


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
           channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +1

Query: 154 LNTMGQLFDDSELQALIDENDPEN-SGKINFDGFCNIASHFLEEEDAEAMQQELKEAFRL 330
           +N + ++ D +E QA + E+DPE+ + K +   F + A    E +    + +  ++    
Sbjct: 109 MNAVMRIMDSAE-QAALSESDPESATSKAHPSAFYD-ARRINEYQSDGRLAEGSRQMLLR 166

Query: 331 YDREGNGYITTSTLKEILAALDDKLSNADLDGII 432
           + R   GY    +L  +L      L + +    I
Sbjct: 167 HMRRFEGYPVNISLSSVLLPAGVSLDDPETQSAI 200


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 81  AA*SIPDV*HHEVWLHRRAEDLH 149
           AA + P    + VW HR   DLH
Sbjct: 889 AAAAAPTASRYAVWAHRMIPDLH 911


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 244 DGFCNIASHFLEEEDAEAMQQELKEAFRLYDR 339
           DG   IA H  +EE++  ++++ K    + DR
Sbjct: 627 DGVTYIADHTRKEEESSRVKEDWKYVAMVLDR 658


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 265  SHFLEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAALDDKLSN 411
            SHF+         + +++  R YD  G         +E L+ALD KL +
Sbjct: 891  SHFMSSMGFAGEVELIRQGERDYDEYGIRIYVKYRNEEKLSALDRKLQS 939


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 485 SMNSSKSTVPEPSVSISAM 429
           S NSS S+ P P V IS +
Sbjct: 871 SSNSSPSSYPSPDVVISGL 889


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 492,344
Number of Sequences: 2352
Number of extensions: 9046
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)