Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30389
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              32   0.003
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   5.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   10.0 

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +1

Query: 274 LEEEDAEAMQQELKEAFRLYDREGNGYITTSTLKEILAA--LDDKLSNADLDGIIAEIDT 447
           L  +D  + +  +   F  YDR  NG +    L++      L++     +L  +I+  DT
Sbjct: 226 LMSQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDT 285

Query: 448 DGSGTVDFDEF 480
           DG G ++ +EF
Sbjct: 286 DGDGKLNVNEF 296


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 138 EDLHHSQHNGTAVR*LR 188
           E +HH  HNG   R L+
Sbjct: 20  ESVHHCHHNGVVHRDLK 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 244 DGFCNIASHFLEEEDAEAMQQELKEAFRLYDR 339
           +G   IA H   EED+  ++++ K    + DR
Sbjct: 484 EGIRFIADHTKREEDSTRVKEDWKYVAMVLDR 515


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 13  SSCYSRQSLTCNM 51
           S C++R   TCNM
Sbjct: 709 SKCHNRNVTTCNM 721


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 156 ENGGDLQHVDVTRLRGV 106
           E GG++Q V ++ L+G+
Sbjct: 278 ELGGEIQCVKISALKGI 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,646
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)