Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30383
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    29   2.0  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    28   3.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    28   3.4  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 167 REAVMRFGLKGGAAVVTIIETLEFISQG 250
           R AV++FG+     +V IIET+ F+S G
Sbjct: 136 RTAVVKFGMHFDKVMVAIIETMVFLSLG 163


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 389 IGRIGYRAPPRVFFFFFCL 333
           IG  G+ APP VF FFF L
Sbjct: 348 IGAFGHEAPPLVFKFFFWL 366


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 389 IGRIGYRAPPRVFFFFFCL 333
           IG  G+ APP VF FFF L
Sbjct: 346 IGAFGHEAPPLVFKFFFWL 364


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 398 RLTIGRIGYRAPPRVFFFFFCLCEWTSSQPTW 303
           R  IG++GYR    +F  F+ +  + S++P W
Sbjct: 360 RRKIGKLGYRRKEELFLVFYMI--FNSNKPLW 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,527
Number of Sequences: 27780
Number of extensions: 253248
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)