Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30383
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    27   7.5  
At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family pr...    27   9.9  
At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family pr...    27   9.9  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -3

Query: 334 YVSGRV----HSPPGVKWLLEPIDIYNVNAPPTLRYKF*GLNYSYN 209
           +V GR+    H P G++WL   IDI          Y+  G    YN
Sbjct: 773 WVGGRILSMTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYN 818


>At3g59060.2 68416.m06584 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 444

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 69  RMKNLEKRIYTFTGGRTSCESARVGTTTLPISAV 170
           R KN+E+R+ T +GG + C   R    T+  ++V
Sbjct: 176 RSKNVEERLDTSSGGSSGCSYGRNNKETVSGTSV 209


>At3g59060.1 68416.m06583 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 442

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 69  RMKNLEKRIYTFTGGRTSCESARVGTTTLPISAV 170
           R KN+E+R+ T +GG + C   R    T+  ++V
Sbjct: 176 RSKNVEERLDTSSGGSSGCSYGRNNKETVSGTSV 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,668,500
Number of Sequences: 28952
Number of extensions: 236779
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)