Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30380
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.3  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   7.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   10.0 

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +2

Query: 317 RSDCTTRKATVXFPRRACARSSGNWT 394
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 281 RTLRPCXXNSGKRSDCTTRKATV 349
           R LR    N    S+CTTRK  +
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRI 78


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 92  KALRRTAILLWGQLIGPVFGVPEP 21
           K  R T    W + +  + G+P+P
Sbjct: 567 KGPRTTYCAFWNEFLPKLKGIPDP 590


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = +2

Query: 317 RSDCTTRKATVXFPRRACARSSGNWT 394
           +S C        F  ++C    G+WT
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWT 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,142
Number of Sequences: 438
Number of extensions: 1504
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)