Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30377
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   1.9  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    24   4.5  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    24   4.5  
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    24   5.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    24   5.9  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    23   7.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    23   7.9  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    23   7.9  

>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 9   KTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDI 140
           K      S   +P  PP+ DK++ + E++P  N   T   ++++
Sbjct: 153 KQKRKTASYTNSPVTPPINDKNILLPEQSPLSNFSTTKISSINV 196


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 6   SKTPHDNKSRDRTPTLPPLPDKSVPI 83
           SK+PH N SR    T      K+VP+
Sbjct: 614 SKSPHPNYSRTPHETYSKASSKNVPL 639


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 30  SRDRTP-TLPPLPDKSVPIIEKAPDINDENTSPDNMDISD 146
           S D++P T PPLP    P+I     + +     +N +I D
Sbjct: 725 SFDKSPVTTPPLPTAPAPVITSRHALVNNQFPTNNPNILD 764


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -1

Query: 135 PYYLEMYFHHLYLEPSQLLERFYPVKEEEWEFCRVTY 25
           PY +   F ++Y +  Q+ +     K +  EFC+  Y
Sbjct: 195 PYAIIRLFKNIYEKEKQIQQAKIRKKIDSLEFCKADY 231


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
 Frame = +3

Query: 6   SKTPHDNKS--RDRTPTLP------PLPDKSVPIIEKAPDINDENTSPDNMDISDSP 152
           S TP  N S  ++  PT+P      P  D     + K P     ++SP+   +S+ P
Sbjct: 262 SNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPIFYPNSSSPNFFSLSEIP 318


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  PHDNKSRDRTPTLPPLPDKSVP 80
           P++    +  P  PPLPD+ VP
Sbjct: 110 PNEPVPEEPLPGEPPLPDEPVP 131


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  SRDRTPTLPPLPDKSVPIIEKAP 98
           S+  T T PP  + + PI+ K+P
Sbjct: 670 SKPSTRTSPPFVNNTKPIVAKSP 692


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  DNKSRDRTPTLPPLPDKSVPIIEK 92
           D +S ++   LPP+ ++SV  +EK
Sbjct: 73  DTESLEQNEVLPPVKNESVLFLEK 96


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  TLPPLPDKSVPIIEKA-PDINDENTSPDNMDISDSP 152
           T PP+  K  PI EK  P+I+    S  ++DI+ SP
Sbjct: 496 TEPPIIPKLAPIDEKGNPNISHLKES-KSLDITHSP 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,944
Number of Sequences: 5004
Number of extensions: 20472
Number of successful extensions: 63
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)