Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30377
(309 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 29 0.74
02_04_0229 + 21093398-21094423 29 0.74
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 29 0.98
07_03_1160 - 24430240-24431268 26 1.0
06_01_0433 - 3078576-3078780,3078797-3078951,3079782-3079821,307... 28 1.3
04_01_0263 - 3532481-3532656,3532710-3532719,3532754-3532785,353... 26 5.2
09_02_0083 + 4081564-4081677,4081853-4082359 26 6.9
01_05_0132 - 18446105-18446197,18446281-18446372,18446684-184467... 26 6.9
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009... 25 9.2
05_06_0065 - 25303143-25303769,25303868-25304758,25305096-253052... 25 9.2
04_03_0115 - 11428116-11429594 25 9.2
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 25 9.2
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 39 RTPTLPPLPDKS--VPIIEKAPDINDENTS 122
+ P++PP+PDK V II K IN+ N++
Sbjct: 303 KLPSIPPIPDKDNLVQIISKINSINNGNSA 332
>02_04_0229 + 21093398-21094423
Length = 341
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 6 SKTPHDNKSRDRTPTLPPLPDKSVPIIE 89
SK P N +D PTLPP PD+ P +E
Sbjct: 135 SKAPK-NPPQDPPPTLPPPPDQPNPSVE 161
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 28.7 bits (61), Expect = 0.98
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = +3
Query: 18 HDNKSRDRTPTLPPLPDKSVPIIEKAPDIN----DENTSPDNMD 137
H +RD TP LP +P VP+ P N ++ +P+N++
Sbjct: 552 HGQDTRDPTPPLPAVPPVQVPVPPVQPHGNWFPVEDGMNPNNLN 595
>07_03_1160 - 24430240-24431268
Length = 342
Score = 26.2 bits (55), Expect(2) = 1.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 42 TPTLPPLPDKSVPIIEKAPDI 104
TP +PPLP+ VP + K PD+
Sbjct: 69 TPGVPPLPNPDVPPMNK-PDV 88
Score = 21.0 bits (42), Expect(2) = 1.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 15 PHDNKSRDRTPTLPPLPD 68
P+D D+ P L P PD
Sbjct: 39 PYDYPKPDQPPPLLPTPD 56
>06_01_0433 -
3078576-3078780,3078797-3078951,3079782-3079821,
3079957-3080009,3080091-3080199,3080324-3080448,
3081112-3081201,3081280-3081342,3081453-3081544,
3081641-3081722,3081913-3082086,3082183-3082264,
3083100-3083224,3083312-3083389,3084047-3084402,
3085311-3085608
Length = 708
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 6 SKTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMD 137
S P +S PT PPLPD V IE PD+ E + D++D
Sbjct: 68 STPPAPTQSPAPAPTPPPLPDSGVGEIE--PDL--EGLTEDSID 107
>04_01_0263 -
3532481-3532656,3532710-3532719,3532754-3532785,
3533237-3533348,3533586-3533649,3533778-3533843,
3533946-3534073,3534205-3534342,3534427-3534539,
3534611-3534776,3535045-3535107,3535197-3535304,
3535408-3535524,3535620-3535785,3535942-3536039,
3536136-3536233,3536378-3536514,3536654-3536878,
3536971-3537176,3537286-3537525
Length = 820
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 18 HDNKSRDRTPTLPPLPDKSVPIIEKAPDINDE 113
HD ++ D P PP+P VPI KA D+ E
Sbjct: 4 HDGEA-DELPPPPPVPANVVPI--KADDVESE 32
>09_02_0083 + 4081564-4081677,4081853-4082359
Length = 206
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 12 TPHDNKSRDRTPTLPPLP-DKSVPIIEKAPDINDENTSPDNMDISDSP 152
TP PT+ P+ D SV I K D+N S +DI+ P
Sbjct: 159 TPKKQNKNLELPTVTPVAKDTSVGPISKDNDLNGSTASHVTIDITIQP 206
>01_05_0132 -
18446105-18446197,18446281-18446372,18446684-18446783,
18446855-18447046,18447216-18447536,18447848-18447943,
18448006-18448098,18448181-18448306,18448358-18449053,
18449130-18449162
Length = 613
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 120 MYFHHLYLEPSQLLERFYPVK 58
MY H YLE SQ R Y +K
Sbjct: 462 MYLEHKYLEESQARRRVYMMK 482
>08_01_1068 +
10899965-10900129,10900408-10900562,10900688-10900996,
10901870-10901939,10902504-10902802,10904305-10904724,
10906063-10906324
Length = 559
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/37 (24%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 123 EMYFHHLYLEPSQLLERFYPVKEEEWEFCR-VTYYRG 16
E F+H + ++ER + + +++W+ + ++Y+RG
Sbjct: 362 EETFNHQHSSLRSIVERTFGIIKKQWKILKEISYFRG 398
>05_06_0065 -
25303143-25303769,25303868-25304758,25305096-25305202,
25305518-25305629
Length = 578
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 30 SRDRTPTLPPLPDKSVP 80
SRD P LPPLP P
Sbjct: 498 SRDMVPPLPPLPSMKSP 514
>04_03_0115 - 11428116-11429594
Length = 492
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 4 IPKHPTIISHATELPLFLLY 63
+P HP + H ++LP +LL+
Sbjct: 181 LPDHPEVTVHRSQLPPYLLH 200
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 141 KYPYYLEMYFHHLYLEPSQLLERFYPVKEEEWEFCR 34
KY Y + ++ YL PSQ+ E P +E+E + R
Sbjct: 149 KYHYNRIFFANNSYL-PSQMPEALRPYREDELRYLR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,599,642
Number of Sequences: 37544
Number of extensions: 113094
Number of successful extensions: 300
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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