Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30377
(309 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29) 29 1.0
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 28 1.8
SB_563| Best HMM Match : Ank (HMM E-Value=0) 28 1.8
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0) 27 2.4
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0) 27 2.4
SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6) 26 5.4
SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24) 26 7.2
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 25 9.5
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05) 25 9.5
>SB_18761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 165
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 42 TPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDS 149
TP P P+K I+ D D+N DN+D+ D+
Sbjct: 121 TPPPSPQPEKETEEIDNDDDDEDDNDENDNVDVDDA 156
>SB_33821| Best HMM Match : zf-MIZ (HMM E-Value=1.3e-29)
Length = 1202
Score = 28.7 bits (61), Expect = 1.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +3
Query: 12 TPHDNKSRDRTP--TLPPLPDKSV--PIIEKAPDINDENTSPDNMDIS 143
TP+ N+ T ++PP P + P+ + APD+ EN D D S
Sbjct: 1111 TPNSNEQCPNTAAGSVPPPPSSTANAPVPDDAPDLTSENLPDDYFDPS 1158
>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
Length = 1118
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 30 SRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDSP 152
S R PT P+ +S ++ P I NT PD+MD S+ P
Sbjct: 94 STSRQPTAAPI--RSARLVIDRPPITANNT-PDSMDNSNQP 131
>SB_563| Best HMM Match : Ank (HMM E-Value=0)
Length = 753
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +3
Query: 36 DRTPTLPPLPDKSVPIIEKAPDIND 110
D+ P LP LP+ +P++ + P+ ++
Sbjct: 35 DQPPILPKLPELPIPVVSETPEYSN 59
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 36 DRTPTLPPLPDKSVPIIEKAPDINDENTSPD 128
DRT + PP P P + A D++ + +PD
Sbjct: 1291 DRTTSTPPTPTPLTPTTKPACDLHCQTLNPD 1321
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 36 DRTPTLPPLPDKSVPIIEKAPDINDENTSPD 128
DRT + PP P P I+ A D++ + + D
Sbjct: 941 DRTTSTPPTPTTHTPTIKPACDLHCQTLNLD 971
>SB_12951| Best HMM Match : Radial_spoke_3 (HMM E-Value=0)
Length = 374
Score = 27.5 bits (58), Expect = 2.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 27 KSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDS 149
K + TP PP K +E P++ E PD D +++
Sbjct: 323 KIEEATPAPPPEEPKQETPVEPTPEVPAETPKPDEDDTANA 363
>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
Length = 909
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 219 RTYIKPKLLILINQKVLMSS*TKENLKYPYYLEMYFHHLY 100
+TY LL L Q+V+ SS ++++ L+ + HHLY
Sbjct: 351 KTYYFSDLLELQKQEVMESSMSEKDKNMVQNLDKHLHHLY 390
>SB_20537| Best HMM Match : Vicilin_N (HMM E-Value=2.6)
Length = 624
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 21 DNKSRDRTPTLPPLPDKSVPIIEKAPDINDEN--TSPDNMDISD 146
D +S D+ +PP D SVP+ E D N T N D+ +
Sbjct: 300 DWESTDKRYKIPPKADGSVPLAEDWEDTTQSNEYTVGSNTDLGN 343
>SB_2719| Best HMM Match : CUB (HMM E-Value=1.9e-24)
Length = 614
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 45 PTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDSP 152
P + P P + P + PD+ ENTS + +++ P
Sbjct: 434 PPVKPKPKRQKPAPK--PDVTSENTSANKPEVTTEP 467
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 27 KSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDSP*FKMT 167
KSRD T PP +S + P + + D +D +P ++T
Sbjct: 500 KSRDPVATPPPRSPRSPKVTMSPPPSPGRHATVDELDCGHNPVRELT 546
>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2537
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 30 SRDRTPTLPPLPDKSVPI-IEKAPDI 104
SR+R PP P K P+ + KA D+
Sbjct: 1001 SRNREAKQPPSPQKQAPVEVRKASDV 1026
>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
Length = 514
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 138 YPYYLEMYFHHLYLEPSQ 85
YPY L MYF L+L P+Q
Sbjct: 65 YPY-LPMYFKQLHLSPNQ 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,619,816
Number of Sequences: 59808
Number of extensions: 135204
Number of successful extensions: 357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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