Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30377
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   1.2  
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr...    26   4.7  
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr...    26   4.7  
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l...    26   4.7  
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l...    26   4.7  
Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical p...    25   8.1  
Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    25   8.1  
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 27  KSRDRTPTLPPLPDKSVPIIEKAPDINDENTS 122
           K +  TP LP +  KSVP+I + PD    + S
Sbjct: 16  KEQRPTPKLPLIKGKSVPMISELPDEEQNHRS 47


>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
           protein B0457.1b protein.
          Length = 1012

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 66  PVKEEEWEFCRVTYYRGVFW 7
           PVK++E  FC  T  RGV W
Sbjct: 173 PVKKKEDVFCSATNRRGVNW 192


>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
           protein B0457.1a protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 66  PVKEEEWEFCRVTYYRGVFW 7
           PVK++E  FC  T  RGV W
Sbjct: 175 PVKKKEDVFCSATNRRGVNW 194


>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
           protein LAT-1B protein.
          Length = 1012

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 66  PVKEEEWEFCRVTYYRGVFW 7
           PVK++E  FC  T  RGV W
Sbjct: 173 PVKKKEDVFCSATNRRGVNW 192


>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
           protein LAT-1A protein.
          Length = 1014

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 66  PVKEEEWEFCRVTYYRGVFW 7
           PVK++E  FC  T  RGV W
Sbjct: 175 PVKKKEDVFCSATNRRGVNW 194


>Z92779-3|CAD90173.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   SKTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           ++TP D      T ++ P+P  +VP +   P +N +  SP
Sbjct: 673 TETPPDPSRTPSTSSMNPVPSLAVP-MSPGPYLNSDPPSP 711


>Z79694-10|CAD90170.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   SKTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           ++TP D      T ++ P+P  +VP +   P +N +  SP
Sbjct: 673 TETPPDPSRTPSTSSMNPVPSLAVP-MSPGPYLNSDPPSP 711


>Z73912-6|CAD90190.2| 2155|Caenorhabditis elegans Hypothetical
           protein ZK524.2d protein.
          Length = 2155

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 6   SKTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           ++TP D      T ++ P+P  +VP +   P +N +  SP
Sbjct: 673 TETPPDPSRTPSTSSMNPVPSLAVP-MSPGPYLNSDPPSP 711


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 21  DNKSRDRTPTLPPLPDKSVPI---IEKAPDINDENTSPDN 131
           D +  D T T+PP  + ++PI    +  P   + N SP N
Sbjct: 633 DERPMDATDTMPPAIECALPISSVFQPVPMETEANISPTN 672


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
           protein F35A5.1 protein.
          Length = 1274

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 9   KTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           K P ++      P   P P+K  P++ K   +   + SP
Sbjct: 797 KPPWEDDDAPAEPVNVPEPEKKTPVLAKKTPVKPRDPSP 835


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,507,959
Number of Sequences: 27780
Number of extensions: 106625
Number of successful extensions: 335
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)