Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30377
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   0.36 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   0.84 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   7.8  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -1

Query: 207 KPKLLILINQKVLMSS*TKENLKYPYYLEMYFHHLYLE 94
           +PK++  ++ K + ++    N  Y  Y ++Y++  Y+E
Sbjct: 78  EPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNINYIE 115


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 6   SKTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDN 131
           +K     ++ +R P LPP   + +P +   P     +T+PD+
Sbjct: 625 TKRDGTQETEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDS 666


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 66  PVKEEEWEFCRVTYYRGVFWN 4
           P++EEEWE    + Y+  F N
Sbjct: 340 PLEEEEWENENESDYQDAFCN 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = +3

Query: 45  PTLPP---LPDKSVPIIEKAPDINDENTSPDNMDISDSP 152
           PTL P   LP +  P++   P  +    +   +D+S  P
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSAKP 519


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 123 EMYFHHLYLEPSQLLERFYPVKEE 52
           + YFH  Y +   L  R   V+EE
Sbjct: 188 QFYFHQFYKQQPDLNYRNSDVREE 211


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 106 MMKIHLQIIWIFQILLS 156
           MMK  + I+WI  +L+S
Sbjct: 1   MMKSLVGIMWIVLVLIS 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,946
Number of Sequences: 438
Number of extensions: 1381
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)