Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30377
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    29   0.64 
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    29   0.84 
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    29   0.84 
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    29   0.84 
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    28   1.1  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    27   2.6  
At4g34440.1 68417.m04894 protein kinase family protein contains ...    26   4.5  
At4g01110.1 68417.m00149 hypothetical protein                          26   5.9  
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ...    26   5.9  
At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidase (GA...    25   7.8  
At2g30350.2 68415.m03694 endo/excinuclease amino terminal domain...    25   7.8  
At2g30350.1 68415.m03693 endo/excinuclease amino terminal domain...    25   7.8  

>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 9   KTPHDNKSRDRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISDSP 152
           KTP  N    ++P+  P P K  P +   P  N    SP     + SP
Sbjct: 47  KTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPSPGPDTPSP 94


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 36  DRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           D +P++PPLP+   P+   A D     + P
Sbjct: 12  DHSPSMPPLPEPQPPLPNYAADFGSARSEP 41


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 813

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 36  DRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           D +P++PPLP+   P+   A D     + P
Sbjct: 12  DHSPSMPPLPEPQPPLPNYAADFGSARSEP 41


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 814

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 36  DRTPTLPPLPDKSVPIIEKAPDINDENTSP 125
           D +P++PPLP+   P+   A D     + P
Sbjct: 12  DHSPSMPPLPEPQPPLPNYAADFGSARSEP 41


>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +3

Query: 9   KTPHDNKSRDRTPTLPPLPD-KSVPIIEKAPDINDENTSP 125
           + P + + RDR+P  PP  D K  P +   P   D   SP
Sbjct: 65  RPPPNRRERDRSPLPPPRRDYKRRPSLSPPPPYRDRRHSP 104


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
            SP|Q09472 E1A-associated protein p300 {Homo sapiens},
            SP|Q92793 CREB-binding protein {Homo sapiens}; contains
            Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
            PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 90   SQLLERFYPVKEEEWEFCRVTYYRGVFWN 4
            + L +RF+   EE     R+ Y+ G FW+
Sbjct: 996  TNLYDRFFDSTEEYMTAARLPYFEGSFWS 1024


>At4g34440.1 68417.m04894 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 670

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 54  PPLPDKSVPIIEKAPDINDENTSPD 128
           PP P+ S P+   AP     N SP+
Sbjct: 92  PPAPEGSTPVTPPAPPQTPSNQSPE 116


>At4g01110.1 68417.m00149 hypothetical protein
          Length = 265

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 72 FYPVKEEEWEFCRV 31
          FYP K+ +W  CRV
Sbjct: 50 FYPTKKRQWSRCRV 63


>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
           Membrane-associated protein Hem (Dhem-2)
           (Swiss-Prot:P55162) [Drosophila melanogaster]; weak
           similarity to Nck-associated protein 1 (NAP 1)
           (p125Nap1) (Membrane-associated protein HEM-2)
           (Swiss-Prot:P55161) [Rattus norvegicus]
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 36  DRTPTLPPLPDKSVPIIEKAPDINDENTSPDNMDISD 146
           D  PTL  L  + V  +E  P    EN S    D+SD
Sbjct: 520 DLDPTLKGLFQRIVQHLESIPKAQGENVSAITCDLSD 556


>At2g34555.1 68415.m04244 gibberellin 2-oxidase / GA2-oxidase
           (GA2OX3) identical to ga2ox3 [GI:4678370]
          Length = 335

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 129 YLEMYFHHLYLEPSQLLERFYPVKEEEWEFCRVTYY 22
           +LEM    L +EP + L R   VKE +    R+ +Y
Sbjct: 151 FLEMVEEELKIEPKEKLSRLVKVKESD-SCLRMNHY 185


>At2g30350.2 68415.m03694 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 368

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 66  DKSVPIIEKAPDINDENTSPDNMDISD 146
           D S P  E++P++N+E+   D+ D S+
Sbjct: 182 DSSQPEDEESPEVNEEDDDDDDDDSSN 208


>At2g30350.1 68415.m03693 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 334

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 66  DKSVPIIEKAPDINDENTSPDNMDISD 146
           D S P  E++P++N+E+   D+ D S+
Sbjct: 148 DSSQPEDEESPEVNEEDDDDDDDDSSN 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,177,933
Number of Sequences: 28952
Number of extensions: 97727
Number of successful extensions: 264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)