Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30373
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                31   0.74 
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   2.3  
SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)                    28   4.0  
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    28   4.0  

>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 67  YNRVYSTVSPFVYKPGR---YVADPGRYDPSRDNSGRYIP 177
           YNR+ +   P++ +PGR   Y   PGR DP     GR  P
Sbjct: 670 YNRLQARDDPYIKQPGRDDPYNKQPGRDDPYIKQPGRDDP 709


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 423 NVCGCDHLAGNVCGCDWHGNGRL 355
           N  GC+   GN  GC++ G+ R+
Sbjct: 382 NTMGCEFQGGNTMGCEFQGDSRI 404


>SB_30499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 245 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 334
           PVL     +P S PRR S     +LTR PA
Sbjct: 111 PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 140


>SB_25844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -1

Query: 432 LAGNVCGCDHLAGNVCGCDWHGNGRLHDGQGNNAGSLVSITKV 304
           L GN CG   L GN CG   +GN       GN +G+   +  V
Sbjct: 238 LYGNKCGTS-LYGNKCGTSLYGNKSGTSLYGNKSGNPPDVVAV 279


>SB_43300| Best HMM Match : C2 (HMM E-Value=7.2e-05)
          Length = 304

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 245 PVLLEVPEEPTSEPRRTSANTLVMLTRDPA 334
           PVL     +P S PRR S     +LTR PA
Sbjct: 86  PVLNHTVVQPPSSPRRCSVQLEQILTRSPA 115


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
 Frame = -1

Query: 417 CG-CD---HLAGNVCGCDWHGNGRL-HDGQGN 337
           CG CD     AG V  CDW G+G L  D +GN
Sbjct: 667 CGPCDVAVDSAGRVIACDWSGDGVLVFDSRGN 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,154,272
Number of Sequences: 59808
Number of extensions: 229145
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)