Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30372
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i pr...    40   9e-04
AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4 ...    40   9e-04
U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated p...    38   0.003
AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2 ...    38   0.003
Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical pr...    37   0.006
AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3 ...    37   0.006
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot...    33   0.076
U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t prot...    33   0.076
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    32   0.17 
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    32   0.17 
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    31   0.53 
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    31   0.53 
AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t pr...    30   0.93 
AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t pr...    30   0.93 
U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T prot...    27   6.6  
U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle position...    27   6.6  
AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical...    27   6.6  
AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF039041-9|AAB94188.2|  194|Caenorhabditis elegans Troponin i
           protein 4 protein.
          Length = 194

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 28/102 (27%), Positives = 40/102 (39%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           +RK+ EVRKR+EEAS       GF+TP                                 
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75

Query: 292 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEXEKFDLEYI 417
                   ++D  NED ++ V  +  ER+  LE E +D+ YI
Sbjct: 76  QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYI 115


>AB107583-1|BAD89381.1|  194|Caenorhabditis elegans troponin I 4
           protein.
          Length = 194

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 28/102 (27%), Positives = 40/102 (39%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           +RK+ EVRKR+EEAS       GF+TP                                 
Sbjct: 16  ERKKEEVRKRLEEASRMKKAKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQRIL 75

Query: 292 XXXCGKPKNIDDANEDTIKRVCKDYHERIARLEXEKFDLEYI 417
                   ++D  NED ++ V  +  ER+  LE E +D+ YI
Sbjct: 76  QERIIPLPDLD--NEDDLEAVYDEIRERLIDLESENYDVSYI 115


>U40951-3|AAG01564.2|  242|Caenorhabditis elegans Uncoordinated
           protein 27 protein.
          Length = 242

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           + K+AEVRKR+EEA        GF+TP                                 
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76

Query: 292 XXXCGKPKNIDDANE-DTIKRVCKDYHERIARLEXEKFDLEYI 417
                   N+D  ++   ++++  D   R+ +LE EK+D+ Y+
Sbjct: 77  ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYV 119


>AB107357-1|BAD89378.1|  242|Caenorhabditis elegans troponin I 2
           protein.
          Length = 242

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           + K+AEVRKR+EEA        GF+TP                                 
Sbjct: 17  EAKKAEVRKRLEEAGNKKKAKKGFLTPERKKKLRKLLMVKAAEDLKRQQLLKEQERQKAL 76

Query: 292 XXXCGKPKNIDDANE-DTIKRVCKDYHERIARLEXEKFDLEYI 417
                   N+D  ++   ++++  D   R+ +LE EK+D+ Y+
Sbjct: 77  ADRTISLPNVDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYV 119


>Z81593-2|CAB04737.1|  260|Caenorhabditis elegans Hypothetical
           protein T20B3.2 protein.
          Length = 260

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
 Frame = +1

Query: 118 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
           K+AEVRKRMEEA+       GF+TP                                   
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90

Query: 298 XCGKPKNIDDANED-TIKRVCKDYHERIARLEXEKFDLEY 414
                 ++D  N+   + ++ +D   R+  LE EKFD+ +
Sbjct: 91  RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINF 130


>AB107359-1|BAD89380.1|  260|Caenorhabditis elegans troponin I 3
           protein.
          Length = 260

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
 Frame = +1

Query: 118 KRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
           K+AEVRKRMEEA+       GF+TP                                   
Sbjct: 31  KKAEVRKRMEEAAKKGSKKKGFLTPERKKKLRKLLMMKAAEDLKQQQMLKEQERQKTLQQ 90

Query: 298 XCGKPKNIDDANED-TIKRVCKDYHERIARLEXEKFDLEY 414
                 ++D  N+   + ++ +D   R+  LE EKFD+ +
Sbjct: 91  RTIPLPDVDSINDQGQLLKIYEDMFARVCALEEEKFDINF 130


>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
            3, isoform b protein.
          Length = 1178

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 316  NIDDANEDTIKRVCKDYHERIARLEXEKFDLEYIX*KERY 435
            N  +  +  +K   K+ H+RI +LE EK+DLE    ++ Y
Sbjct: 1043 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEY 1082


>U29082-2|AAT92082.1|  350|Caenorhabditis elegans Troponin t protein
           3, isoform a protein.
          Length = 350

 Score = 33.5 bits (73), Expect = 0.076
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 316 NIDDANEDTIKRVCKDYHERIARLEXEKFDLEYIX*KERY 435
           N  +  +  +K   K+ H+RI +LE EK+DLE    ++ Y
Sbjct: 209 NASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEY 248


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           + K+AEVRKR+EEA        GF+TP                                 
Sbjct: 30  EAKKAEVRKRLEEAG-QKKQKKGFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88

Query: 292 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEXEKFDLEYI 417
                   N+D  ++   ++ +  D   R+  LE EK+D+ +I
Sbjct: 89  AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHI 131


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
 Frame = +1

Query: 112 DRKRAEVRKRMEEASXXXXXXXGFMTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 291
           + K+AEVRKR+EEA        GF+TP                                 
Sbjct: 30  EAKKAEVRKRLEEAG-QKKQKKGFLTPERKKKLRKLLMNKAAEDLKTQQLRKEQERVKVL 88

Query: 292 XXXCGKPKNIDDANEDT-IKRVCKDYHERIARLEXEKFDLEYI 417
                   N+D  ++   ++ +  D   R+  LE EK+D+ +I
Sbjct: 89  AERTVALPNVDSIDDHAKLEAIYNDLFSRLCNLEEEKYDINHI 131


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 307 KPKNIDDANEDTIKRVCKDYHERIARLEXEKFDLEYIX*KERYGDLR 447
           K +++     + +K   K  H RI +LE EK+DLE    ++ Y DL+
Sbjct: 125 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEY-DLK 170


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 307 KPKNIDDANEDTIKRVCKDYHERIARLEXEKFDLEYIX*KERYGDLR 447
           K +++     + +K   K  H RI +LE EK+DLE    ++ Y DL+
Sbjct: 229 KAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEY-DLK 274


>AF039039-6|AAO25996.1|  308|Caenorhabditis elegans Troponin t
           protein 4, isoform b protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 343 IKRVCKDYHERIARLEXEKFDLEYIX*KERYGDLR 447
           +K   K+ H+RI +LE +K+DLE    ++ Y DL+
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEY-DLK 249


>AF039039-5|AAB94176.2|  347|Caenorhabditis elegans Troponin t
           protein 4, isoform a protein.
          Length = 347

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 343 IKRVCKDYHERIARLEXEKFDLEYIX*KERYGDLR 447
           +K   K+ H+RI +LE +K+DLE    ++ Y DL+
Sbjct: 216 MKAKIKELHQRICKLEAQKYDLEKRHERQEY-DLK 249


>U44759-1|AAA86906.1|  405|Caenorhabditis elegans troponin T
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 343 IKRVCKDYHERIARLEXEKFDLE 411
           +K   +  H RI +LE EK+DLE
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLE 254


>U43282-4|AAA83615.1|  405|Caenorhabditis elegans Muscle positioning
           protein 2 protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 343 IKRVCKDYHERIARLEXEKFDLE 411
           +K   +  H RI +LE EK+DLE
Sbjct: 232 LKERIRGLHARIVKLEAEKYDLE 254


>AL110478-10|CAE17956.3|  758|Caenorhabditis elegans Hypothetical
           protein Y26D4A.13 protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 334 EDTIKRVCKDYHERIARLEXEKFDLEYIX*KER 432
           ED + R+C+ Y + + R+   + +LEY   K R
Sbjct: 671 EDVVNRLCESYKKLLVRVAELETELEYEKEKNR 703


>AL117205-7|CAB55160.1|  293|Caenorhabditis elegans Hypothetical
           protein Y116A8A.8 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 331 NEDTIKRVCKDYHERIARLEXEKFDLEYI 417
           + D   R CK+Y+  + RLE  K ++EY+
Sbjct: 154 SHDDAHRACKEYNAVLTRLETPK-EMEYV 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,762,522
Number of Sequences: 27780
Number of extensions: 85290
Number of successful extensions: 271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)