Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30368
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             210   4e-55
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         34   0.060
SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)         33   0.11 
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   5.3  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     27   6.9  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         27   9.2  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  210 bits (514), Expect = 4e-55
 Identities = 99/147 (67%), Positives = 119/147 (80%), Gaps = 16/147 (10%)
 Frame = +2

Query: 2   FQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEGTYIDK 133
           +QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEGTYIDK
Sbjct: 9   YQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEGTYIDK 68

Query: 134 KCPFTGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 313
           KCPFTGNVSIRGRILTG+ + MKM+RTI+IRRDYLHY+ KYNRFEKRH+N++ H SPCFR
Sbjct: 69  KCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYLHYIKKYNRFEKRHKNLAAHCSPCFR 128

Query: 314 DVEIGDIVTIGECRPLSKTVRFNVLKV 394
           D+ +GD++T+G+CRPLSKTVRFNVLKV
Sbjct: 129 DIALGDLITVGQCRPLSKTVRFNVLKV 155


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 34.3 bits (75), Expect = 0.060
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +2

Query: 326 GDIVTIGECRPLSKTVRFNVLKV 394
           GD+V I ECRPLSK  +FNV ++
Sbjct: 29  GDVVRIKECRPLSKMKKFNVEEI 51


>SB_48102| Best HMM Match : Ribosomal_S17 (HMM E-Value=4.2e-34)
          Length = 208

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 146 TGNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEI 325
           T   + R ++  G+V   KM +TI +  +     P Y +   +   +  H      +  +
Sbjct: 5   TAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDEN--NEAGM 62

Query: 326 GDIVTIGECRPLSKTVRFNVLKV 394
           GD V I E RPLS T R+ ++++
Sbjct: 63  GDRVRIMETRPLSATKRWRLVEI 85


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 128 QCRYPQSPLWEF*SLNQHSYGDACP 54
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 319 HVPEARRQMHGHIPVPFLEP 260
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 173 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCF 310
           I+  VV K K  +  VI RD+  Y     ++ +R     VH SP F
Sbjct: 64  IMNKVVPKEKEDKNKVITRDHQAYFAFSCKYHRRMVLTVVHFSPSF 109


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 385 NIESNCFGQRSAFADRYNIT-NLHVPEARRQMHGHIPVPFLEPIVFG*VVKVIAADHDSS 209
           N+ ++     S  +  YNIT NLH+ E         P+P      FG +  + A D++ S
Sbjct: 76  NLMADLSSDGSEVSKTYNITINLHLMEVLSSDGNESPIPRKGTFDFGGMQDIAALDYEES 135


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 11  QATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSIRGRILTGV 187
           + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V++R R   G 
Sbjct: 221 KVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRARARAGN 280

Query: 188 VQK 196
            Q+
Sbjct: 281 AQR 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,514
Number of Sequences: 59808
Number of extensions: 301726
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)