Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30368
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B) ribo...   188   3e-48
At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)           182   1e-46
At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)           179   1e-45
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si...    39   0.002
At3g18880.1 68416.m02398 ribosomal protein S17 family protein si...    37   0.009
At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast ...    31   0.35 
At4g35720.1 68417.m05069 expressed protein contains Pfam profile...    31   0.61 
At4g26980.1 68417.m03882 expressed protein                             27   5.7  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   5.7  

>At4g30800.1 68417.m04363 40S ribosomal protein S11 (RPS11B)
           ribosomal protein S11, Arabidopsis thaliana,PIR2:C35542
          Length = 159

 Score =  188 bits (457), Expect = 3e-48
 Identities = 92/136 (67%), Positives = 105/136 (77%), Gaps = 5/136 (3%)
 Frame = +2

Query: 2   FQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 166
           F KQ  VFL+ K   K K       R  KN+GLGFKTPREAIEGTYID+KCPFTG VSIR
Sbjct: 9   FLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIR 68

Query: 167 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 346
           GRIL+G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD VTIG
Sbjct: 69  GRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFR-VKEGDRVTIG 127

Query: 347 ECRPLSKTVRFNVLKV 394
           +CRPLSKTVRFNVLKV
Sbjct: 128 QCRPLSKTVRFNVLKV 143


>At3g48930.1 68416.m05345 40S ribosomal protein S11 (RPS11A)
          Length = 160

 Score =  182 bits (444), Expect = 1e-46
 Identities = 88/136 (64%), Positives = 102/136 (75%), Gaps = 5/136 (3%)
 Frame = +2

Query: 2   FQKQATVFLNRKGGMKRK-----DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 166
           F KQ  VFL+ K   K K       R  KN+GLGFKTPREAI+G Y+DKKCPFTG VSIR
Sbjct: 9   FLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIR 68

Query: 167 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 346
           GRIL G     KMQRTI++RRDYLH++ KY R+EKRH N+  H+SPCFR V+ GD + IG
Sbjct: 69  GRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHIIIG 127

Query: 347 ECRPLSKTVRFNVLKV 394
           +CRPLSKTVRFNVLKV
Sbjct: 128 QCRPLSKTVRFNVLKV 143


>At5g23740.1 68418.m02784 40S ribosomal protein S11 (RPS11C)
          Length = 159

 Score =  179 bits (435), Expect = 1e-45
 Identities = 89/136 (65%), Positives = 102/136 (75%), Gaps = 5/136 (3%)
 Frame = +2

Query: 2   FQKQATVFLNRK--GGMKRKDM---RHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 166
           F KQ  VFL+ K  G  KR      R  KN+GLGFKTPREAI+G YID KCPFTG VSIR
Sbjct: 9   FLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIR 68

Query: 167 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIG 346
           GRIL G     KMQRTI++RR+YLH++ KY R+EKRH N+  H+SPCFR V+ GD V IG
Sbjct: 69  GRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFR-VKEGDHVIIG 127

Query: 347 ECRPLSKTVRFNVLKV 394
           +CRPLSKTVRFNVLKV
Sbjct: 128 QCRPLSKTVRFNVLKV 143


>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GI:1620985 from
           [Nicotiana plumbaginifolia]
          Length = 116

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +2

Query: 182 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDV-EIGDIVTIGECRP 358
           G V   KMQ+++V+  D L +   YNR+ KR      H     +D   IGD V +   RP
Sbjct: 6   GTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDD---KDACNIGDRVKLDPSRP 62

Query: 359 LSKTVRFNVLKV 394
           LSK   + V ++
Sbjct: 63  LSKNKHWIVAEI 74


>At3g18880.1 68416.m02398 ribosomal protein S17 family protein
           similar to 40S ribosomal protein S17 GB:Y08858 from
           [Nicotiana plumbaginifolia]
          Length = 105

 Score = 36.7 bits (81), Expect = 0.009
 Identities = 23/66 (34%), Positives = 31/66 (46%)
 Frame = +2

Query: 170 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 349
           + + G V   KMQ ++V+  D L +   YNR+ KR      H         IGD V +  
Sbjct: 2   KAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEK--DSCNIGDRVKLDP 59

Query: 350 CRPLSK 367
            RPLSK
Sbjct: 60  SRPLSK 65


>At1g79850.1 68414.m09328 30S ribosomal protein S17, chloroplast /
           CS17 (RPS17) identical to 30S ribosomal protein S17,
           chloroplast precursor GB:P16180 [Arabidopsis thaliana]
          Length = 149

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +2

Query: 170 RILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGE 349
           + + G V      +T+ +    L   PKY R  +  +    H  P     ++GD+V + +
Sbjct: 51  KTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAH-DPD-NQFKVGDVVRLEK 108

Query: 350 CRPLSKTVRFNVLKV 394
            RP+SKT  F  L V
Sbjct: 109 SRPISKTKSFVALPV 123


>At4g35720.1 68417.m05069 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 325

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 23  FLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 151
           FL+   G+K K+  HHK  G+  K  ++ IE  + +K+   TG
Sbjct: 203 FLSSPKGLKTKNHHHHKGWGIVMKLVKKGIEHHHQEKRDYETG 245


>At4g26980.1 68417.m03882 expressed protein 
          Length = 343

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 92  KTPREAIEGTYIDKKCPFTGNVSIRGRILTGVVQK 196
           + PREA+    +D+  PF  ++  +  ++TGVVQK
Sbjct: 242 EVPREALPDVALDE--PFVKDIDPKTWVVTGVVQK 274


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 167 GRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRN 283
           G+++ GVV+    +R + + R   + L   NRF  RH++
Sbjct: 168 GKVMDGVVKSAIRRRVVHVARVTSNALALVNRFAARHKS 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,877
Number of Sequences: 28952
Number of extensions: 209981
Number of successful extensions: 412
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)