Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30363
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.5  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   7.5  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   7.5  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   10.0 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   10.0 

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 274 EWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQL 393
           +W++    +    +  L       +TL T +GS L +C L
Sbjct: 80  KWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICML 119


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 59  SVREEVGVERHCYTCR 12
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -2

Query: 59  SVREEVGVERHCYTCR 12
           SV    G  + CY CR
Sbjct: 80  SVASTTGFSKECYCCR 95


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 16/64 (25%), Positives = 24/64 (37%)
 Frame = +3

Query: 30  SLNPNFFPNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRA 209
           +L+P   P   +    PE E  +N P        P  ++RRE  P      + P    + 
Sbjct: 22  NLDPPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQP 81

Query: 210 PPNH 221
            P H
Sbjct: 82  RPPH 85


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 152 GAWPHRELPASSPQPSNEGTS 214
           G  PH + P  SPQ  +  +S
Sbjct: 433 GKLPHDDQPPLSPQSDSSSSS 453


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,198
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)