Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30363
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44200.1 68416.m04739 protein kinase family protein contains ... 31 0.61
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 29 1.4
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 2.5
At3g03950.2 68416.m00414 expressed protein contains Pfam profile... 28 3.2
At3g03950.1 68416.m00413 expressed protein contains Pfam profile... 28 3.2
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 28 3.2
At5g03890.1 68418.m00365 hypothetical protein 27 5.7
At1g12970.1 68414.m01506 leucine-rich repeat family protein 27 5.7
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 7.5
At5g62270.1 68418.m07818 expressed protein 27 9.9
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 27 9.9
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 27 9.9
At1g52325.1 68414.m05906 hypothetical protein 27 9.9
At1g17130.1 68414.m02087 cell cycle control protein-related cont... 27 9.9
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 291 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 458
AP LH + + +N +S+ S+ Q S L N + PH V V + RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 101 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 220
+A P +S P P A PH++ P S PQP+N + P
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +3
Query: 51 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 215
P+ P+ P+E N PY +P+ K RR P P + P+P PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512
>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 424
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 240 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 368
MKQ V+ LQR GE P+ K I YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259
>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 425
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +3
Query: 240 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 368
MKQ V+ LQR GE P+ K I YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 253 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 363
++ C +WL HL C + TL S I T N L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318
>At5g03890.1 68418.m00365 hypothetical protein
Length = 179
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 332 IDWRVELLVQHLRCLFANHSLQHRLCHLL 246
+++R + V H+ F+ HS+ H HLL
Sbjct: 22 LEYREPISVHHILTQFSGHSISHNNTHLL 50
>At1g12970.1 68414.m01506 leucine-rich repeat family protein
Length = 464
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 162 PTESYLRHHPNPAMRAPPN 218
P SY+ HH +PA APP+
Sbjct: 9 PLLSYVLHHSDPASHAPPS 27
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = +1
Query: 421 SRGKSFTRNATMQQSTHILIDALMLLSIYYAI 516
S+ ++ ++A+M++ ++ D L LLSIYY++
Sbjct: 2332 SKKRALAQSASMEEQ--VIADGLKLLSIYYSV 2361
>At5g62270.1 68418.m07818 expressed protein
Length = 383
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 83 RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPASSPQPSNE 205
RRS + + A G G G W LP S +P NE
Sbjct: 326 RRSSEGWKITVEKLGAKGKRGAGGGWKFMSLPDGSSRPLNE 366
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 325 QSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQST 468
+S+Y +T + L+ + LR+ ++ TL KS+T+ ++ ST
Sbjct: 327 RSVYCLMKTHEPLNRAPLRVPLSGSLVSAETLGNPKSYTKAMNVKDST 374
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +3
Query: 183 HHPNPAMRAPPNHD--YRDTLMKQKVAESVLQRVV---GEEAPKVLHKQFNSPI 329
H+P P M+ PP HD Y M+Q E + + G E P +H P+
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPM 453
>At1g52325.1 68414.m05906 hypothetical protein
Length = 145
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 295 LRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAI 402
L CCT T +S Y + T +L K QL+ +
Sbjct: 31 LECCTEEKTYRSFYVEDSTSSSLIFLKTLFLQLSEL 66
>At1g17130.1 68414.m02087 cell cycle control protein-related
contains similarity to Swiss-Prot:Q9P7C5 cell cycle
control protein cwf16 [Schizosaccharomyces pombe]
Length = 331
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = +3
Query: 63 QDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTES 173
++PK P+++ +S P+++ + + ++++P PT S
Sbjct: 264 ENPKEPKKQAISKQPFKSVHIKV----IKKQPQPTSS 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,699
Number of Sequences: 28952
Number of extensions: 265956
Number of successful extensions: 822
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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