Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30359
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    39   5e-04
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    26   3.8  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   5.1  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   5.1  
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    25   6.7  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   8.9  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 16/55 (29%), Positives = 33/55 (60%)
 Frame = +3

Query: 192 YMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPN 356
           +++++ E S +L    E  D L+ +E++ +    +  EFY  L +I+EF +K+P+
Sbjct: 47  FLNQFRETSKKLLVSHESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPD 101


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 376 PVEFEEVANXRGKSLLRITQFAXEXTDEEGYG 471
           P EFE+V N    S+ R+  +  +   ++G+G
Sbjct: 119 PHEFEKVMNINTNSVYRVAYYMGKIFKKQGFG 150


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 195 MDRYIEASIRL-KELXEDKDGLRKEEISAL-LGXHEXQEFYSRLKQIKEFXRKHPN 356
           +D +I+  I L +E+ ED    R E+I A+ +     +E Y   KQ+     KH N
Sbjct: 245 VDNHIKQVILLDREIREDPTTTR-EDIEAMDIEKERKRENYEEYKQVDRIVAKHLN 299


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = +1

Query: 202 DILKPL*DLKNXMKIKMDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLY-PCP 378
           D LK + +  N +K     +K  +      +S R    D S   S ++   ++ L     
Sbjct: 369 DFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANISSVDQRFLRRLCNDLH 428

Query: 379 VEFEEVANXRGKSLLRITQFAXEXTDEE 462
           + F ++    G  LLRIT    E  DE+
Sbjct: 429 LSFSKIIKVDGTHLLRITFRDLEFNDED 456


>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 93  GKGKNHGRNGQRNSSQKNW 149
           G+G+  GR G +   +K W
Sbjct: 16  GRGRGRGRRGAKRDEEKEW 34


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 434 CVILSRDFPLXFATSSNSTGHGYRY 360
           CV  +R+F L  A  SN   +G RY
Sbjct: 421 CVETNREFNLTLAVKSNIITNGLRY 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,532
Number of Sequences: 5004
Number of extensions: 31280
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)