Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30359
(516 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60 pr... 92 9e-19
U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein. 92 9e-19
BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a, sub... 92 9e-19
BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a, sub... 92 9e-19
AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a, sub... 92 9e-19
AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a, sub... 92 9e-19
>X81789-1|CAA57388.1| 501|Homo sapiens splicing factor SF3a60
protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
>U08815-1|AAA19625.1| 501|Homo sapiens SAP 61 protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
>BC011523-1|AAH11523.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
>BC002395-1|AAH02395.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
>AL603790-5|CAH69930.1| 501|Homo sapiens splicing factor 3a,
subunit 3, 60kDa protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
>AK222554-1|BAD96274.1| 501|Homo sapiens splicing factor 3a,
subunit 3 variant protein.
Length = 501
Score = 92.3 bits (219), Expect = 9e-19
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +3
Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
R DRY+E S L++L +DKDGLRKEE++A+ G +E EFY+RLKQIKEF RKHPNEI
Sbjct: 44 RAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEIC 103
Query: 366 VPMS 377
VPMS
Sbjct: 104 VPMS 107
Score = 50.8 bits (116), Expect = 3e-06
Identities = 46/149 (30%), Positives = 63/149 (42%), Gaps = 1/149 (0%)
Frame = +1
Query: 73 QQRSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWID-ILKPL*DLKNXMKIK 249
QQR YHEE+ER MD M KE+L KK+ S D ++ +L++ K
Sbjct: 7 QQRRYHEEKERLMDVMAKEMLTKKSTLRDQIN--SDHRTRAMQDRYMEVSGNLRDLYDDK 64
Query: 250 MDYEKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQMKYLYPCPVEFEEVANXRGKSLLRI 429
K++ L ++K + P VEFEE+ R ++
Sbjct: 65 DGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKAR-ENPSEE 123
Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
Q E TDEEGYG+Y Y KYIN
Sbjct: 124 AQNLVEFTDEEGYGRYLDLHDC-YLKYIN 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,973,254
Number of Sequences: 237096
Number of extensions: 963089
Number of successful extensions: 1627
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -