Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30359
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical pr...    58   3e-09
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   4.6  

>Z66524-1|CAA91420.2|  500|Caenorhabditis elegans Hypothetical
           protein T13H5.4 protein.
          Length = 500

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 24/64 (37%), Positives = 43/64 (67%)
 Frame = +3

Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEIS 365
           + ++DRY   S  L +  +D+DG +  E+ ++ G +E  EFYSRLK IK+  R++P+E++
Sbjct: 44  KTFVDRYYSVSAELAKFYKDEDGSKSMEMDSVSGPNEFAEFYSRLKVIKDAHRRNPDELA 103

Query: 366 VPMS 377
            P++
Sbjct: 104 EPLT 107



 Score = 34.3 bits (75), Expect = 0.052
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 3/149 (2%)
 Frame = +1

Query: 79  RSYHEERERTMDAMVKEILHKKTGHXGDYKC*SSFEEFTWIDILKPL*DLKNXMKIKMDY 258
           R+ HEERER +D  VKE + +K  H    K  S     T++D    +       K   D 
Sbjct: 9   RNLHEERERLIDITVKEKIAEKLTHKA--KVNSEQRVKTFVDRYYSV--SAELAKFYKDE 64

Query: 259 EKKKYQHC*VHMSXRSSIRDLSKLKSXIENIQM---KYLYPCPVEFEEVANXRGKSLLRI 429
           +  K                 S+LK   +  +    +   P  VEF+++ N    +  R 
Sbjct: 65  DGSKSMEMDSVSGPNEFAEFYSRLKVIKDAHRRNPDELAEPLTVEFQKI-NEEIINPERA 123

Query: 430 TQFAXEXTDEEGYGKYFGPTIARYEKYIN 516
                E +DEE YG++     A+Y+K+IN
Sbjct: 124 EPDMVEFSDEEAYGRFL-DLHAQYDKFIN 151


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 395 TSSNSTGHGYRYFIWMFSXKLFNLLKS 315
           TSS   GH + Y I  +  KL NL K+
Sbjct: 155 TSSFRDGHAFNYLIHSYDRKLINLTKT 181


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical
           protein F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 395 TSSNSTGHGYRYFIWMFSXKLFNLLKS 315
           TSS   GH + Y I  +  KL NL K+
Sbjct: 155 TSSFRDGHAFNYLIHSYDRKLINLTKT 181


>Z54218-3|CAA90955.2|  654|Caenorhabditis elegans Hypothetical
           protein F37B12.2 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 134 FTKKLGIXETINADHRLKNLHG 199
           + KK GI + IN  HRLK+ HG
Sbjct: 21  YIKKHGIAQFINLYHRLKSRHG 42


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
           protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 395 TSSNSTGHGYRYFIWMFSXKLFNLLKS 315
           TSS   GH + Y I  +  KL NL K+
Sbjct: 155 TSSFRDGHAFNYLIHSYDRKLINLTKT 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,972,152
Number of Sequences: 27780
Number of extensions: 165915
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)