Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30359
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06160.1 68418.m00687 splicing factor-related contains some s...    44   5e-05
At3g28940.1 68416.m03614 avirulence-responsive protein, putative...    30   1.1  
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    29   2.5  
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00...    27   9.9  
At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein...    27   9.9  
At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00...    27   9.9  
At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / proly...    27   9.9  

>At5g06160.1 68418.m00687 splicing factor-related contains some
           similarity to splicing factor SP:Q12874 from [Homo
           sapiens]
          Length = 504

 Score = 44.4 bits (100), Expect = 5e-05
 Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
 Frame = +3

Query: 222 RLKELXEDKDGLRKEEISAL-----LGXHEXQEFYSRLKQIKEFXRKHPN 356
           +L E  EDKDG   +EI+AL      G +   EFY RLK+I+E+ ++HP+
Sbjct: 57  KLVETYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPS 106


>At3g28940.1 68416.m03614 avirulence-responsive protein, putative /
           avirulence induced gene (AIG) protein, putative strong
           similarity to SP|P54121 AIG2 protein (avrRpt2-induced
           gene) {Arabidopsis thaliana}
          Length = 169

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 186 RIYMDRYIEASIRLKELXEDKDGLRKEE 269
           R++MD++IEAS +  E  ++ DG  +EE
Sbjct: 129 RLHMDKFIEASTKFIEWKKNPDGRSREE 156


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 225 LKELXEDKDGLRKEEISALLGXHEXQEFYSRLKQIKEFXRKHPNEI 362
           LKE+  ++  L+   +SA L   + QE++S    +K   R HP EI
Sbjct: 207 LKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHPVEI 252


>At3g26000.1 68416.m03239 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 453

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  FDSSLLATTKLP*GKGKNHGRNG 122
           FD SL +T K P   G+N+G  G
Sbjct: 130 FDGSLFSTCKFPESSGENNGFGG 152


>At3g20475.1 68416.m02592 DNA mismatch repair MutS family protein
           similar to SP|O43196 MutS protein homolog 5 {Homo
           sapiens}; contains Pfam profile PF00488: MutS domain V
          Length = 321

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 73  QQRSYHEERERTMDAMVKEILHKKTGHXGDY 165
           Q+  YH  + R +D ++ +I HK   H  +Y
Sbjct: 6   QRFFYHTSKTRELDNLLGDIYHKILAHQNNY 36


>At2g16300.1 68415.m01866 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 322

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 420 QGFSPXICHLFKFYRTWVQIFHLD 349
           Q F+P + H  ++  TW ++F LD
Sbjct: 282 QRFTPEVRHYDEYLYTWFRVFRLD 305


>At1g76140.1 68414.m08842 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|Q9QUR6 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Mus
           musculus}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 136 HKKT-GHX--GDYKC*SSFEEFTWIDILKPL*DLKNXMKIKMDY 258
           HK T GH    DY C  + EEF W+    PL ++K   + + D+
Sbjct: 601 HKFTIGHAWTSDYGCSENEEEFHWLIKYSPLHNVKRPWEQQTDH 644


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,302,525
Number of Sequences: 28952
Number of extensions: 150841
Number of successful extensions: 367
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)