Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30358
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   1.3  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   2.9  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   5.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.9  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    25   8.9  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 230 DLYEPDYLISLQPDEPVYDCLNLQLKGYDYAIL 328
           D Y  + +I +QPDE +Y  +N++  G   A L
Sbjct: 364 DAYHNELVIRVQPDEAIYFKMNIKQPGLSEAPL 396


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -3

Query: 439 TWLEPLYL*LLSRCRPTVLYL*SHHFSISMDLTLARFQYSIIITFKLQVQTVIDWLIRL* 260
           TW   LYL L  R    V    +H+FS ++ L L + Q++ I T  L V  +I +++   
Sbjct: 455 TWWGWLYLDLKERRWLYVYACFAHYFSFALVLALVQ-QFAKIQTILLFVIEIISFILL-- 511

Query: 259 ANQVIRFI*VTFKSSLICYYMICPNRI 179
              V R   V FK+S  C +++   R+
Sbjct: 512 --AVFRPF-VGFKNS-FCVFLVALTRV 534


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 473 YSIGIQHLEQYYLA*TVVPLTAEQVSPNSPLLVIPS 366
           Y +G+QH++Q     T   L    V  N P  + PS
Sbjct: 569 YRLGLQHIDQQCSVETANMLKTVLVQLNIPFAIFPS 604


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 116 MLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKS 229
           MLR+NL+  ++    +  +  D VG   II    +FK+
Sbjct: 667 MLRSNLRQNLQIVVQIATRYSDLVGAQRIIEMFEKFKT 704


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 19/76 (25%), Positives = 38/76 (50%)
 Frame = +2

Query: 116 MLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISLQPDEPVYDCLN 295
           +L++ +  +  + +S+   I+ S  T   +   + +   + E   LIS+QP E V   +N
Sbjct: 306 LLQSTIYAVDTNGQSIFHHIVQSTSTPSKVAAAKYYLDCILEK--LISIQPFENVVRLVN 363

Query: 296 LQLKGYDYAILEACQS 343
           LQ    D ++L A ++
Sbjct: 364 LQDSNGDTSLLIAARN 379


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 180 SIILSCT--LRQLFIKFFKLFRSMFEYMFSQSASILIFLIVCTSHKNLQCL 34
           SI++SC      LF+  F  F ++F ++ +  A     + +    KN++ L
Sbjct: 198 SIVISCLPFFGPLFLNVFSFFATIFTFIAAVIAVATYRIAISELEKNIEIL 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,466
Number of Sequences: 5004
Number of extensions: 33042
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)