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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30358
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    31   0.73 
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    30   1.3  
07_01_0626 - 4681826-4682707                                           29   2.2  
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152...    28   5.1  
10_08_0842 - 20954712-20957738                                         28   5.1  
07_03_1726 - 29062654-29064414                                         27   6.8  
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659           27   8.9  
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565...    27   8.9  

>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = +2

Query: 83  IDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISL 262
           I  L +N +  M R+N  + + + + +QL  +D + +  +   +RR K+  +EP YL  +
Sbjct: 231 IKQLSDNTFQLMFRSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKA--FEPTYLYGV 288

Query: 263 Q 265
           +
Sbjct: 289 E 289


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 24/88 (27%), Positives = 42/88 (47%)
 Frame = -2

Query: 491 EHCAHIYSIGIQHLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIYGSDFGTLPI*HNH 312
           E+C  +  + +Q    + L   ++P +   +S N   LV+   Q I G    T+     H
Sbjct: 353 ENCTELIELSLQ----WNLLDGILPSSVSNISTNLQALVLRGNQ-ISGRIPSTIG--KLH 405

Query: 311 NL*VASSNSHRLAHQVVS*SGNQVHIGH 228
           NL +   + ++L+ Q+ S  GN  H+GH
Sbjct: 406 NLYILDLSINKLSGQIPSTIGNISHLGH 433


>07_01_0626 - 4681826-4682707
          Length = 293

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 131 LKNLIKSCRSVQLKIIDSVGTNHIIT 208
           L N++ +CR+++L+ I SVG   ++T
Sbjct: 117 LNNMLVTCRNIKLESITSVGITRVVT 142


>12_01_0203 +
           1520079-1520302,1522346-1522405,1522794-1523016,
           1523038-1523434,1523522-1523781,1523866-1524011,
           1524044-1524317,1524501-1525547
          Length = 876

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 455 HLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIYGSDFGTLP 327
           +LE Y+   T+ PL    +     L  +PS++H  G+ FG  P
Sbjct: 726 NLESYHFLSTIPPLGHLPLLKLLTLRKLPSVKHANGTSFGGFP 768


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +2

Query: 65  TIRKIKIDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEP 244
           TI  I  D   E    +     ++ ++ +   +++K+ID+ G +   ++Q   +  L   
Sbjct: 399 TINSIFDDVRLETNAFDTSTRKVQEVVGAVEGIKVKVIDTPGLSCSSSDQHHNQKILNSV 458

Query: 245 DYLISLQPDEPV--YDCLNLQLKGY-DYAILE 331
             LIS  P + V  +D L++Q + Y D  +L+
Sbjct: 459 KRLISRNPPDIVLYFDRLDMQTRDYGDVPLLQ 490


>07_03_1726 - 29062654-29064414
          Length = 586

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 239 EPDYLISLQPDEPVYDCLNLQLKGYDYAI--LEACQSQIHRYA 361
           EP+ ++S      VY C N+Q    +YA+  L+  +   H+YA
Sbjct: 421 EPELMLSSDSHARVYTCGNVQCPHSNYALGFLDRNERNAHQYA 463


>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
          Length = 522

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 419 PLTAEQVSPNSPLLVIPSLQH--IYGSDFGTLPI*HN 315
           PLTA   SP   L  +P L H  +Y S  G L + H+
Sbjct: 65  PLTASSSSPRLSLDFVPDLSHFSLYDSHHGLLLLRHH 101


>03_05_1149 +
           30753463-30754695,30754834-30755017,30755321-30756549,
           30756702-30756816,30757126-30758084
          Length = 1239

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
 Frame = +2

Query: 278 VYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDC-WATPAQQLKVQRFKPGSTALD 454
           V+ C +     + + +L         Y+ V+ L      W T   QL      PGS+   
Sbjct: 56  VHACTDHNGVSFLHKLLHRLLEHKEMYSNVVNLLFHGIEWQTEGVQLLCSFLGPGSSVKQ 115

Query: 455 AEYQLNIYERNVQVVDVP 508
            E+Q N++        VP
Sbjct: 116 VEFQKNVFGTKSSAALVP 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,857,097
Number of Sequences: 37544
Number of extensions: 188322
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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