Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30358
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 31 0.73
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 30 1.3
07_01_0626 - 4681826-4682707 29 2.2
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152... 28 5.1
10_08_0842 - 20954712-20957738 28 5.1
07_03_1726 - 29062654-29064414 27 6.8
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659 27 8.9
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 27 8.9
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 30.7 bits (66), Expect = 0.73
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 83 IDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISL 262
I L +N + M R+N + + + + +QL +D + + + +RR K+ +EP YL +
Sbjct: 231 IKQLSDNTFQLMFRSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKA--FEPTYLYGV 288
Query: 263 Q 265
+
Sbjct: 289 E 289
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/88 (27%), Positives = 42/88 (47%)
Frame = -2
Query: 491 EHCAHIYSIGIQHLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIYGSDFGTLPI*HNH 312
E+C + + +Q + L ++P + +S N LV+ Q I G T+ H
Sbjct: 353 ENCTELIELSLQ----WNLLDGILPSSVSNISTNLQALVLRGNQ-ISGRIPSTIG--KLH 405
Query: 311 NL*VASSNSHRLAHQVVS*SGNQVHIGH 228
NL + + ++L+ Q+ S GN H+GH
Sbjct: 406 NLYILDLSINKLSGQIPSTIGNISHLGH 433
>07_01_0626 - 4681826-4682707
Length = 293
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 131 LKNLIKSCRSVQLKIIDSVGTNHIIT 208
L N++ +CR+++L+ I SVG ++T
Sbjct: 117 LNNMLVTCRNIKLESITSVGITRVVT 142
>12_01_0203 +
1520079-1520302,1522346-1522405,1522794-1523016,
1523038-1523434,1523522-1523781,1523866-1524011,
1524044-1524317,1524501-1525547
Length = 876
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 455 HLEQYYLA*TVVPLTAEQVSPNSPLLVIPSLQHIYGSDFGTLP 327
+LE Y+ T+ PL + L +PS++H G+ FG P
Sbjct: 726 NLESYHFLSTIPPLGHLPLLKLLTLRKLPSVKHANGTSFGGFP 768
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Frame = +2
Query: 65 TIRKIKIDAL*ENMYSNMLRNNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEP 244
TI I D E + ++ ++ + +++K+ID+ G + ++Q + L
Sbjct: 399 TINSIFDDVRLETNAFDTSTRKVQEVVGAVEGIKVKVIDTPGLSCSSSDQHHNQKILNSV 458
Query: 245 DYLISLQPDEPV--YDCLNLQLKGY-DYAILE 331
LIS P + V +D L++Q + Y D +L+
Sbjct: 459 KRLISRNPPDIVLYFDRLDMQTRDYGDVPLLQ 490
>07_03_1726 - 29062654-29064414
Length = 586
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 239 EPDYLISLQPDEPVYDCLNLQLKGYDYAI--LEACQSQIHRYA 361
EP+ ++S VY C N+Q +YA+ L+ + H+YA
Sbjct: 421 EPELMLSSDSHARVYTCGNVQCPHSNYALGFLDRNERNAHQYA 463
>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
Length = 522
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 419 PLTAEQVSPNSPLLVIPSLQH--IYGSDFGTLPI*HN 315
PLTA SP L +P L H +Y S G L + H+
Sbjct: 65 PLTASSSSPRLSLDFVPDLSHFSLYDSHHGLLLLRHH 101
>03_05_1149 +
30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Frame = +2
Query: 278 VYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDC-WATPAQQLKVQRFKPGSTALD 454
V+ C + + + +L Y+ V+ L W T QL PGS+
Sbjct: 56 VHACTDHNGVSFLHKLLHRLLEHKEMYSNVVNLLFHGIEWQTEGVQLLCSFLGPGSSVKQ 115
Query: 455 AEYQLNIYERNVQVVDVP 508
E+Q N++ VP
Sbjct: 116 VEFQKNVFGTKSSAALVP 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,857,097
Number of Sequences: 37544
Number of extensions: 188322
Number of successful extensions: 434
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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