Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30358
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.98 
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        29   1.7  
SB_16756| Best HMM Match : Oxidored_q2 (HMM E-Value=4)                 28   5.3  
SB_37052| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_21583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 335 CQSQIHRYAEVMGLQVEDCWATPAQQLKVQRFKPGSTALDAEYQ 466
           C S +    +++  ++ DCW   A++L  Q   P   AL   YQ
Sbjct: 92  CNSSVMEVEDMLKRRIPDCWRPMARKLSGQNGNPQDPALCQMYQ 135


>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +2

Query: 125 NNLKNLIKSCRSVQLKIIDSVGTNHIITNQRRFKSDLYEPDYLISLQPDEPVYDCLNLQL 304
           N +K      R +  K+ +     +++  +++ K +    D L  L  DEP Y  LNL  
Sbjct: 262 NEIKKAASGLRYIIFKMDEK--KENVVFEKKKMKCECSHEDVLDDLPADEPRYIALNLDY 319

Query: 305 KGYDYA 322
           K  + A
Sbjct: 320 KNVEGA 325


>SB_16756| Best HMM Match : Oxidored_q2 (HMM E-Value=4)
          Length = 131

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 494 PEHCAHIYSIGIQHLEQYY-LA*TVVPLTAEQVSPNSPLL 378
           PE+  H+Y   I HL+ ++ L  TV+     ++SP +P++
Sbjct: 83  PENQCHVYLYSILHLQDFHDLPLTVIFNIILRISPMTPMI 122


>SB_37052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 287 CLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDC 391
           C N  ++ +D  +L  CQ +I RYA+++   +  C
Sbjct: 43  CFNNLIRNFD--VLCECQKKIRRYADLLSFHIIFC 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,278
Number of Sequences: 59808
Number of extensions: 235348
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)